Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC42Q96M95 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC42Q96M95 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CCDC42Q96M95 AC096733.2-201ENST00000609937 1394 ntBASIC19.74■□□□□ 0.75
CCDC42Q96M95 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC42Q96M95 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC42Q96M95 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.74■□□□□ 0.75
CCDC42Q96M95 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC42Q96M95 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC42Q96M95 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
CCDC42Q96M95 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC42Q96M95 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC42Q96M95 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CCDC42Q96M95 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CCDC42Q96M95 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC42Q96M95 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC42Q96M95 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.73■□□□□ 0.75
CCDC42Q96M95 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC42Q96M95 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC42Q96M95 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC42Q96M95 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC42Q96M95 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC42Q96M95 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC19.73■□□□□ 0.75
CCDC42Q96M95 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC42Q96M95 HLA-DQB1-201ENST00000374943 1656 ntBASIC19.73■□□□□ 0.75
CCDC42Q96M95 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC42Q96M95 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC42Q96M95 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CCDC42Q96M95 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC42Q96M95 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC42Q96M95 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
CCDC42Q96M95 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.73■□□□□ 0.75
CCDC42Q96M95 MNT-208ENST00000575394 606 ntTSL 4 BASIC19.73■□□□□ 0.75
CCDC42Q96M95 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC42Q96M95 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC42Q96M95 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC42Q96M95 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC42Q96M95 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC42Q96M95 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC42Q96M95 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CCDC42Q96M95 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC42Q96M95 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC42Q96M95 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC42Q96M95 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 FAM197Y1-201ENST00000421178 764 ntBASIC19.72■□□□□ 0.75
CCDC42Q96M95 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC42Q96M95 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC42Q96M95 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC42Q96M95 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC42Q96M95 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC42Q96M95 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CCDC42Q96M95 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC42Q96M95 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CCDC42Q96M95 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC42Q96M95 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC42Q96M95 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.71■□□□□ 0.75
CCDC42Q96M95 MFAP1P1-201ENST00000442257 1255 ntBASIC19.71■□□□□ 0.75
CCDC42Q96M95 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC42Q96M95 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC42Q96M95 SLC25A1P4-201ENST00000567977 778 ntBASIC19.71■□□□□ 0.75
CCDC42Q96M95 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC42Q96M95 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC42Q96M95 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC42Q96M95 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC42Q96M95 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC42Q96M95 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC42Q96M95 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CCDC42Q96M95 SDHAP2-201ENST00000455183 2001 ntBASIC19.71■□□□□ 0.75
CCDC42Q96M95 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms