Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC33.64■■■□□ 2.988e-7■■■□□ 14.9
UPF1Q92900 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC30.25■■■□□ 2.438e-7■■■□□ 14.9
UPF1Q92900 UBN1-207ENST00000589191 705 ntTSL 324.03■■□□□ 1.448e-7■■■□□ 14.9
UPF1Q92900 ZNF326-204ENST00000394583 1956 ntTSL 1 (best)22.18■■□□□ 1.148e-7■■■□□ 14.9
UPF1Q92900 PAX8-AS1-206ENST00000445745 2570 ntTSL 1 (best)15.3■□□□□ 0.048e-7■■■□□ 14.9
UPF1Q92900 SCMH1-213ENST00000472037 735 ntTSL 315.19■□□□□ 0.028e-7■■■□□ 14.9
UPF1Q92900 GATAD2B-211ENST00000637918 1027 ntTSL 514.68□□□□□ -0.068e-7■■■□□ 14.9
UPF1Q92900 PAX8-AS1-207ENST00000451179 1196 ntTSL 1 (best)14.16□□□□□ -0.148e-7■■■□□ 14.9
UPF1Q92900 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.1□□□□□ -0.158e-7■■■□□ 14.9
UPF1Q92900 PAX8-AS1-213ENST00000609210 1328 ntTSL 5 BASIC13.65□□□□□ -0.228e-7■■■□□ 14.9
UPF1Q92900 BBS4-213ENST00000567279 1876 ntTSL 213.65□□□□□ -0.228e-7■■■□□ 14.9
UPF1Q92900 ZNF326-201ENST00000340281 2729 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.278e-7■■■□□ 14.9
UPF1Q92900 PUDP-201ENST00000381077 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.338e-7■■■□□ 14.9
UPF1Q92900 AP001972.5-201ENST00000624624 2338 ntBASIC12.85□□□□□ -0.358e-7■■■□□ 14.9
UPF1Q92900 USP47-202ENST00000339865 7775 ntTSL 2 BASIC12.55□□□□□ -0.48e-7■■■□□ 14.9
UPF1Q92900 TATDN3-209ENST00000527693 946 ntTSL 212.33□□□□□ -0.448e-7■■■□□ 14.9
UPF1Q92900 GATAD2B-201ENST00000368655 7478 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.528e-7■■■□□ 14.9
UPF1Q92900 BBS4-210ENST00000566400 2055 ntTSL 1 (best)10.89□□□□□ -0.678e-7■■■□□ 14.9
UPF1Q92900 ALMS1-204ENST00000484298 12595 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.898e-7■■■□□ 14.9
UPF1Q92900 PAX8-AS1-218ENST00000623031 442 ntTSL 58.94□□□□□ -0.988e-7■■■□□ 14.9
UPF1Q92900 PAX8-AS1-209ENST00000510859 2313 ntTSL 28.89□□□□□ -0.998e-7■■■□□ 14.9
UPF1Q92900 PAX8-AS1-201ENST00000333145 2319 ntTSL 2 BASIC8.71□□□□□ -1.028e-7■■■□□ 14.9
UPF1Q92900 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC8.4□□□□□ -1.068e-7■■■□□ 14.9
UPF1Q92900 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC8.33□□□□□ -1.088e-7■■■□□ 14.9
UPF1Q92900 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC8.3□□□□□ -1.088e-7■■■□□ 14.9
UPF1Q92900 ALMS1-208ENST00000620466 6720 ntTSL 28.19□□□□□ -1.18e-7■■■□□ 14.9
UPF1Q92900 USP47-201ENST00000305481 3577 ntTSL 1 (best)7.26□□□□□ -1.258e-7■■■□□ 14.9
UPF1Q92900 ALMS1-201ENST00000423048 5194 ntTSL 1 (best)7.2□□□□□ -1.268e-7■■■□□ 14.9
UPF1Q92900 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.38e-7■■■□□ 14.9
UPF1Q92900 PAX8-AS1-202ENST00000422956 11799 ntTSL 1 (best) BASIC6.88□□□□□ -1.318e-7■■■□□ 14.9
UPF1Q92900 COPZ1-208ENST00000550027 553 ntTSL 1 (best)15.07■□□□□ 02e-13■■■□□ 14.9
UPF1Q92900 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.162e-6■■■□□ 14.9
UPF1Q92900 SEPT5-214ENST00000480423 563 ntTSL 425.98■■□□□ 1.755e-9■■■□□ 14.9
UPF1Q92900 SEPT5-205ENST00000412544 1108 ntTSL 523.92■■□□□ 1.425e-9■■■□□ 14.9
UPF1Q92900 SEPT5-208ENST00000431124 920 ntTSL 521.34■■□□□ 1.015e-9■■■□□ 14.9
UPF1Q92900 DPM2-203ENST00000470181 928 ntTSL 1 (best)20.27■□□□□ 0.844e-7■■■□□ 14.9
UPF1Q92900 DPM2-204ENST00000473360 744 ntTSL 518.94■□□□□ 0.624e-7■■■□□ 14.9
UPF1Q92900 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.291e-8■■■□□ 14.9
UPF1Q92900 PPT1-208ENST00000529905 1836 ntTSL 518.3■□□□□ 0.521e-13■■■□□ 14.9
UPF1Q92900 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.682e-6■■■□□ 14.9
UPF1Q92900 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC29.03■■■□□ 2.243e-7■■■□□ 14.9
UPF1Q92900 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.183e-7■■■□□ 14.9
UPF1Q92900 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.993e-7■■■□□ 14.9
UPF1Q92900 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC6.33□□□□□ -1.45e-7■■■□□ 14.9
UPF1Q92900 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC25.07■■□□□ 1.62e-6■■■□□ 14.9
UPF1Q92900 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.312e-6■■■□□ 14.9
UPF1Q92900 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.12e-6■■■□□ 14.9
UPF1Q92900 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC21.38■■□□□ 1.012e-6■■■□□ 14.9
UPF1Q92900 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.942e-6■■■□□ 14.9
UPF1Q92900 ABHD14B-207ENST00000487005 1998 ntTSL 219.2■□□□□ 0.662e-6■■■□□ 14.9
UPF1Q92900 PCBP4-213ENST00000489595 539 ntTSL 418.41■□□□□ 0.542e-6■■■□□ 14.9
UPF1Q92900 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.94■□□□□ 0.32e-6■■■□□ 14.9
UPF1Q92900 SLC6A8-210ENST00000485324 2401 ntTSL 220.64■□□□□ 0.895e-13■■■□□ 14.8
UPF1Q92900 ZNF346-210ENST00000513587 977 ntTSL 230.71■■■□□ 2.514e-7■■■□□ 14.8
UPF1Q92900 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC29.85■■■□□ 2.374e-7■■■□□ 14.8
UPF1Q92900 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC26.21■■□□□ 1.794e-7■■■□□ 14.8
UPF1Q92900 ZNF346-206ENST00000508155 1622 ntTSL 225.88■■□□□ 1.734e-7■■■□□ 14.8
UPF1Q92900 ZC3HAV1-201ENST00000242351 7100 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.464e-7■■■□□ 14.8
UPF1Q92900 SLC38A2-201ENST00000256689 4888 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.99e-9■■■□□ 14.8
UPF1Q92900 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC30.02■■■□□ 2.43e-6■■■□□ 14.8
UPF1Q92900 AKT1-215ENST00000555926 553 ntTSL 328.48■■■□□ 2.152e-6■■■□□ 14.8
UPF1Q92900 DEDD2-211ENST00000601135 723 ntTSL 225.89■■□□□ 1.743e-6■■■□□ 14.8
UPF1Q92900 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC25.87■■□□□ 1.733e-6■■■□□ 14.8
UPF1Q92900 TMC6-210ENST00000588792 843 ntTSL 224.85■■□□□ 1.573e-6■■■□□ 14.8
UPF1Q92900 STAT6-208ENST00000553499 603 ntTSL 423.74■■□□□ 1.393e-6■■■□□ 14.8
UPF1Q92900 TMC6-219ENST00000591594 614 ntTSL 323.67■■□□□ 1.383e-6■■■□□ 14.8
UPF1Q92900 TMC6-211ENST00000589271 1099 ntTSL 523.45■■□□□ 1.343e-6■■■□□ 14.8
UPF1Q92900 TMC6-205ENST00000586126 821 ntTSL 323.45■■□□□ 1.343e-6■■■□□ 14.8
UPF1Q92900 HIST1H3D-203ENST00000635641 1637 ntTSL 522.74■■□□□ 1.233e-6■■■□□ 14.8
UPF1Q92900 TMC6-223ENST00000592594 551 ntTSL 422.52■■□□□ 1.23e-6■■■□□ 14.8
UPF1Q92900 STAT6-206ENST00000553275 670 ntTSL 322■■□□□ 1.113e-6■■■□□ 14.8
UPF1Q92900 TMC6-209ENST00000588087 2384 ntTSL 221.91■■□□□ 1.13e-6■■■□□ 14.8
UPF1Q92900 STAT6-213ENST00000554825 644 ntTSL 421.69■■□□□ 1.063e-6■■■□□ 14.8
UPF1Q92900 TMC6-214ENST00000590162 517 ntTSL 221.48■■□□□ 1.033e-6■■■□□ 14.8
UPF1Q92900 TMC6-207ENST00000586697 571 ntTSL 421.23■□□□□ 0.993e-6■■■□□ 14.8
UPF1Q92900 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.22■□□□□ 0.993e-6■■■□□ 14.8
UPF1Q92900 TMC6-221ENST00000592063 743 ntTSL 521.04■□□□□ 0.963e-6■■■□□ 14.8
UPF1Q92900 STAT6-207ENST00000553397 553 ntTSL 420.78■□□□□ 0.923e-6■■■□□ 14.8
UPF1Q92900 TCP11L1-203ENST00000527661 2468 ntTSL 520.49■□□□□ 0.873e-6■■■□□ 14.8
UPF1Q92900 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.573e-6■■■□□ 14.8
UPF1Q92900 BCAT2-204ENST00000593515 1664 ntTSL 518.51■□□□□ 0.553e-6■■■□□ 14.8
UPF1Q92900 TMC6-224ENST00000593044 3070 ntTSL 217.81■□□□□ 0.443e-6■■■□□ 14.8
UPF1Q92900 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.77■□□□□ 0.433e-6■■■□□ 14.8
UPF1Q92900 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.383e-6■■■□□ 14.8
UPF1Q92900 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC17.36■□□□□ 0.373e-6■■■□□ 14.8
UPF1Q92900 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC17.32■□□□□ 0.363e-6■■■□□ 14.8
UPF1Q92900 TCP11L1-206ENST00000528962 711 ntTSL 317.25■□□□□ 0.353e-6■■■□□ 14.8
UPF1Q92900 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.353e-6■■■□□ 14.8
UPF1Q92900 TRMT2B-202ENST00000372936 3327 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.054e-6■■■□□ 14.8
UPF1Q92900 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -08e-13■■■□□ 14.8
UPF1Q92900 ADM2-202ENST00000395738 4276 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.033e-6■■■□□ 14.8
UPF1Q92900 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.14e-6■■■□□ 14.8
UPF1Q92900 STAT6-220ENST00000556155 2924 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.153e-6■■■□□ 14.8
UPF1Q92900 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.188e-13■■■□□ 14.8
UPF1Q92900 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC13.84□□□□□ -0.193e-6■■■□□ 14.8
UPF1Q92900 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.234e-6■■■□□ 14.8
UPF1Q92900 ACOX1-212ENST00000591963 388 ntTSL 513.56□□□□□ -0.243e-6■■■□□ 14.8
UPF1Q92900 STAT6-212ENST00000554764 2777 ntTSL 213.43□□□□□ -0.263e-6■■■□□ 14.8
UPF1Q92900 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.274e-6■■■□□ 14.8
UPF1Q92900 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.333e-6■■■□□ 14.8
Retrieved 100 of 15,879 protein–RNA pairs in 110.6 ms