RNA–Protein interactions for RNA: ENST00000441587.2

ALMS1-IT1-201, ALMS1 intronic transcript 1, humanhuman

TSL 1 (best) BASIC

Gene ALMS1-IT1, Length 2,107 nt, Biotype sense intronic.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1-IT1-201ENST00000441587 CHIC1Q5VXU3 224 aa16.09■□□□□ 0.17
ALMS1-IT1-201ENST00000441587 AEBP2Q6ZN18 517 aaPredicted RBP15.51■□□□□ 0.07
ALMS1-IT1-201ENST00000441587 PHF23Q9BUL5 403 aaPredicted RBP14.26□□□□□ -0.13
ALMS1-IT1-201ENST00000441587 PLPPR3Q6T4P5 718 aa13.53□□□□□ -0.24
ALMS1-IT1-201ENST00000441587 POTEDQ86YR6 584 aa13.49□□□□□ -0.25
ALMS1-IT1-201ENST00000441587 EHMT2Q96KQ7 1210 aa13.24□□□□□ -0.29
ALMS1-IT1-201ENST00000441587 SENP3Q9H4L4 574 aaPredicted RBP13.03□□□□□ -0.32
ALMS1-IT1-201ENST00000441587 KCNA4P22459 653 aa12.87□□□□□ -0.35
ALMS1-IT1-201ENST00000441587 ADRA2BP18089 450 aa12.64□□□□□ -0.39
ALMS1-IT1-201ENST00000441587 CSRNP3Q8WYN3 585 aa12.58□□□□□ -0.4
ALMS1-IT1-201ENST00000441587 SLC24A1O60721 1099 aa12.47□□□□□ -0.41
ALMS1-IT1-201ENST00000441587 SLC4A1APQ9BWU0 796 aaKnown RBP12.44□□□□□ -0.42
ALMS1-IT1-201ENST00000441587 PPP6R1Q9UPN7 881 aa12.28□□□□□ -0.44
ALMS1-IT1-201ENST00000441587 RTN4Q9NQC3 1192 aaKnown RBP12.04□□□□□ -0.48
ALMS1-IT1-201ENST00000441587 AMER1Q5JTC6 1135 aaPredicted RBP12.04□□□□□ -0.48
ALMS1-IT1-201ENST00000441587 PPP4R3CPQ6ZMV5 832 aa12.04□□□□□ -0.48
ALMS1-IT1-201ENST00000441587 NCBP3Q53F19 620 aaKnown RBP12.02□□□□□ -0.49
ALMS1-IT1-201ENST00000441587 FOXD1Q16676 465 aa11.96□□□□□ -0.49
ALMS1-IT1-201ENST00000441587 ZBTB22O15209 634 aa11.84□□□□□ -0.51
ALMS1-IT1-201ENST00000441587 NPM3O75607 178 aaKnown RBP11.83□□□□□ -0.52
ALMS1-IT1-201ENST00000441587 PIAS4Q8N2W9 510 aaPredicted RBP11.56□□□□□ -0.56
ALMS1-IT1-201ENST00000441587 FOXD4L1Q9NU39 408 aa11.56□□□□□ -0.56
ALMS1-IT1-201ENST00000441587 CNKSR2Q8WXI2 1034 aa11.48□□□□□ -0.57
ALMS1-IT1-201ENST00000441587 FKBP8Q14318 412 aa11.34□□□□□ -0.59
ALMS1-IT1-201ENST00000441587 SCAF1Q9H7N4 1312 aaKnown RBP11.3□□□□□ -0.6
ALMS1-IT1-201ENST00000441587 DNAJC5BQ9UF47 199 aa11.27□□□□□ -0.6
ALMS1-IT1-201ENST00000441587 ATXN8OSP0DMR3 200 aa11.05□□□□□ -0.64
ALMS1-IT1-201ENST00000441587 PLCB2Q00722 1185 aa11.05□□□□□ -0.64
ALMS1-IT1-201ENST00000441587 RNF216Q9NWF9 866 aaPredicted RBP11.01□□□□□ -0.65
ALMS1-IT1-201ENST00000441587 BCANQ96GW7 911 aa10.98□□□□□ -0.65
ALMS1-IT1-201ENST00000441587 PRKCSHP14314 528 aaPredicted RBP10.96□□□□□ -0.65
ALMS1-IT1-201ENST00000441587 HAP1P54257 671 aaPredicted RBP10.92□□□□□ -0.66
ALMS1-IT1-201ENST00000441587 SLC4A2P04920 1241 aa10.91□□□□□ -0.66
ALMS1-IT1-201ENST00000441587 MYCNP04198 464 aaPredicted RBP10.91□□□□□ -0.66
ALMS1-IT1-201ENST00000441587 MAPK8IP2Q13387 824 aaPredicted RBP10.91□□□□□ -0.66
ALMS1-IT1-201ENST00000441587 MSH5O43196 834 aa10.9□□□□□ -0.66
ALMS1-IT1-201ENST00000441587 TAOK2Q9UL54 1235 aa10.89□□□□□ -0.67
ALMS1-IT1-201ENST00000441587 DAXXQ9UER7 740 aaPredicted RBP10.81□□□□□ -0.68
ALMS1-IT1-201ENST00000441587 VSIG10Q8N0Z9 540 aa10.75□□□□□ -0.69
ALMS1-IT1-201ENST00000441587 DCAF8L2P0C7V8 631 aa10.72□□□□□ -0.69
ALMS1-IT1-201ENST00000441587 TPRNQ4KMQ1 711 aa10.72□□□□□ -0.69
ALMS1-IT1-201ENST00000441587 HOXD11P31277 338 aaPredicted RBP10.69□□□□□ -0.7
ALMS1-IT1-201ENST00000441587 FBXO3Q9UK99 471 aa10.68□□□□□ -0.7
ALMS1-IT1-201ENST00000441587 ATF5Q9Y2D1 282 aaPredicted RBP10.54□□□□□ -0.72
ALMS1-IT1-201ENST00000441587 DMRT2Q9Y5R5 561 aa10.53□□□□□ -0.72
ALMS1-IT1-201ENST00000441587 KDM2AQ9Y2K7 1162 aa10.51□□□□□ -0.73
ALMS1-IT1-201ENST00000441587 TTBK1Q5TCY1 1321 aaPredicted RBP10.51□□□□□ -0.73
ALMS1-IT1-201ENST00000441587 MYT1Q01538 1121 aa10.49□□□□□ -0.73
ALMS1-IT1-201ENST00000441587 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.49□□□□□ -0.73
ALMS1-IT1-201ENST00000441587 VASPP50552 380 aaPredicted RBP10.48□□□□□ -0.73
ALMS1-IT1-201ENST00000441587 TIMELESSQ9UNS1 1208 aa10.45□□□□□ -0.74
ALMS1-IT1-201ENST00000441587 FBLN2P98095 1184 aa10.45□□□□□ -0.74
ALMS1-IT1-201ENST00000441587 PKD2Q13563 968 aa10.43□□□□□ -0.74
ALMS1-IT1-201ENST00000441587 IFNLR1Q8IU57 520 aaPredicted RBP10.42□□□□□ -0.74
ALMS1-IT1-201ENST00000441587 ARXQ96QS3 562 aa10.42□□□□□ -0.74
ALMS1-IT1-201ENST00000441587 TULP1O00294 542 aaPredicted RBP10.42□□□□□ -0.74
ALMS1-IT1-201ENST00000441587 BBXQ8WY36 941 aaPredicted RBP10.41□□□□□ -0.74
ALMS1-IT1-201ENST00000441587 SPDYE4A6NLX3 237 aa10.4□□□□□ -0.74
ALMS1-IT1-201ENST00000441587 PAXIP1Q6ZW49 1069 aaPredicted RBP10.4□□□□□ -0.74
ALMS1-IT1-201ENST00000441587 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.39□□□□□ -0.75
ALMS1-IT1-201ENST00000441587 HNRNPUL2Q1KMD3 747 aaKnown RBP10.39□□□□□ -0.75
ALMS1-IT1-201ENST00000441587 SAMD1Q6SPF0 538 aaPredicted RBP10.39□□□□□ -0.75
ALMS1-IT1-201ENST00000441587 CFAP44Q96MT7 982 aa10.38□□□□□ -0.75
ALMS1-IT1-201ENST00000441587 PELP1Q8IZL8 1130 aaKnown RBP10.37□□□□□ -0.75
ALMS1-IT1-201ENST00000441587 GTF3C3Q9Y5Q9 886 aa10.33□□□□□ -0.76
ALMS1-IT1-201ENST00000441587 ERICH6Q7L0X2 663 aa10.31□□□□□ -0.76
ALMS1-IT1-201ENST00000441587 NISCHQ9Y2I1 1504 aa10.31□□□□□ -0.76
ALMS1-IT1-201ENST00000441587 PROM2Q8N271 834 aa10.3□□□□□ -0.76
ALMS1-IT1-201ENST00000441587 CACNB1Q02641 598 aaPredicted RBP10.29□□□□□ -0.76
ALMS1-IT1-201ENST00000441587 NPM1P06748 294 aaKnown RBP eCLIP10.26□□□□□ -0.77
ALMS1-IT1-201ENST00000441587 ZNF219Q9P2Y4 722 aaPredicted RBP10.26□□□□□ -0.77
ALMS1-IT1-201ENST00000441587 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.25□□□□□ -0.77
ALMS1-IT1-201ENST00000441587 NBR1Q14596 966 aa10.25□□□□□ -0.77
ALMS1-IT1-201ENST00000441587 POTEHQ6S545 545 aa10.25□□□□□ -0.77
ALMS1-IT1-201ENST00000441587 SPRYD3Q8NCJ5 442 aa10.25□□□□□ -0.77
ALMS1-IT1-201ENST00000441587 APLP2Q06481 763 aa10.23□□□□□ -0.77
ALMS1-IT1-201ENST00000441587 TSHZ2Q9NRE2 1034 aa10.23□□□□□ -0.77
ALMS1-IT1-201ENST00000441587 ECM2O94769 699 aaPredicted RBP10.22□□□□□ -0.77
ALMS1-IT1-201ENST00000441587 HOMEZQ8IX15 550 aa10.16□□□□□ -0.78
ALMS1-IT1-201ENST00000441587 U3KPZ7 1027 aaPredicted RBP10.15□□□□□ -0.78
ALMS1-IT1-201ENST00000441587 SPOCK2Q92563 424 aa10.13□□□□□ -0.79
ALMS1-IT1-201ENST00000441587 KLHL34Q8N239 644 aa10.13□□□□□ -0.79
ALMS1-IT1-201ENST00000441587 MKRN4PQ13434 485 aaPredicted RBP10.12□□□□□ -0.79
ALMS1-IT1-201ENST00000441587 DCAF8L1A6NGE4 600 aa10.12□□□□□ -0.79
ALMS1-IT1-201ENST00000441587 TMEM132AQ24JP5 1023 aa10.09□□□□□ -0.79
ALMS1-IT1-201ENST00000441587 RGL2O15211 777 aa10.07□□□□□ -0.8
ALMS1-IT1-201ENST00000441587 RANGAP1P46060 587 aaPredicted RBP10.06□□□□□ -0.8
ALMS1-IT1-201ENST00000441587 DNAJC5Q9H3Z4 198 aa10.06□□□□□ -0.8
ALMS1-IT1-201ENST00000441587 C14orf37Q86TY3 774 aa10.04□□□□□ -0.8
ALMS1-IT1-201ENST00000441587 CHGAP10645 457 aaKnown RBP10.02□□□□□ -0.81
ALMS1-IT1-201ENST00000441587 PLCD3Q8N3E9 789 aa9.89□□□□□ -0.83
ALMS1-IT1-201ENST00000441587 STAG3Q9UJ98 1225 aa9.85□□□□□ -0.83
ALMS1-IT1-201ENST00000441587 CIZ1Q9ULV3 898 aaPredicted RBP9.85□□□□□ -0.83
ALMS1-IT1-201ENST00000441587 HS6ST3Q8IZP7 471 aa9.83□□□□□ -0.84
ALMS1-IT1-201ENST00000441587 POLA2Q14181 598 aa9.79□□□□□ -0.84
ALMS1-IT1-201ENST00000441587 MIER1Q8N108 512 aa9.79□□□□□ -0.84
ALMS1-IT1-201ENST00000441587 PODXL2Q9NZ53 605 aa9.76□□□□□ -0.85
ALMS1-IT1-201ENST00000441587 SUPT5HO00267 1087 aaKnown RBP9.75□□□□□ -0.85
ALMS1-IT1-201ENST00000441587 TRIM41Q8WV44 630 aa9.75□□□□□ -0.85
ALMS1-IT1-201ENST00000441587 TRHP20396 242 aaPredicted RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms