Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CXCL12P48061 SDHAP2-201ENST00000455183 2001 ntBASIC18.15■□□□□ 0.5
CXCL12P48061 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CXCL12P48061 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CXCL12P48061 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CXCL12P48061 AP002414.3-201ENST00000589352 1468 ntBASIC18.14■□□□□ 0.5
CXCL12P48061 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
CXCL12P48061 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
CXCL12P48061 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CXCL12P48061 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL12P48061 AC099343.3-201ENST00000605834 2503 ntBASIC18.14■□□□□ 0.49
CXCL12P48061 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL12P48061 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.14■□□□□ 0.49
CXCL12P48061 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL12P48061 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL12P48061 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL12P48061 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL12P48061 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL12P48061 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL12P48061 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL12P48061 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.14■□□□□ 0.49
CXCL12P48061 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.14■□□□□ 0.49
CXCL12P48061 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.14■□□□□ 0.49
CXCL12P48061 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.14■□□□□ 0.49
CXCL12P48061 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.14■□□□□ 0.49
CXCL12P48061 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.14■□□□□ 0.49
CXCL12P48061 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.14■□□□□ 0.49
CXCL12P48061 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CXCL12P48061 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL12P48061 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CXCL12P48061 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CXCL12P48061 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.13■□□□□ 0.49
CXCL12P48061 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL12P48061 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CXCL12P48061 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.13■□□□□ 0.49
CXCL12P48061 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL12P48061 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.13■□□□□ 0.49
CXCL12P48061 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL12P48061 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL12P48061 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL12P48061 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL12P48061 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL12P48061 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL12P48061 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.13■□□□□ 0.49
CXCL12P48061 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CXCL12P48061 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CXCL12P48061 LAGE3P1-201ENST00000425356 484 ntBASIC18.13■□□□□ 0.49
CXCL12P48061 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.13■□□□□ 0.49
CXCL12P48061 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.13■□□□□ 0.49
CXCL12P48061 DNAJB3-202ENST00000449667 1266 ntBASIC18.13■□□□□ 0.49
CXCL12P48061 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.13■□□□□ 0.49
CXCL12P48061 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.13■□□□□ 0.49
CXCL12P48061 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.13■□□□□ 0.49
CXCL12P48061 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.13■□□□□ 0.49
CXCL12P48061 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.13■□□□□ 0.49
CXCL12P48061 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.13■□□□□ 0.49
CXCL12P48061 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.13■□□□□ 0.49
CXCL12P48061 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.13■□□□□ 0.49
CXCL12P48061 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL12P48061 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CXCL12P48061 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.13■□□□□ 0.49
CXCL12P48061 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL12P48061 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL12P48061 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CXCL12P48061 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CXCL12P48061 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CXCL12P48061 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CXCL12P48061 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CXCL12P48061 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CXCL12P48061 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CXCL12P48061 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.12■□□□□ 0.49
CXCL12P48061 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CXCL12P48061 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.12■□□□□ 0.49
CXCL12P48061 AC211486.1-202ENST00000416371 468 ntBASIC18.12■□□□□ 0.49
CXCL12P48061 AC023274.1-201ENST00000418278 595 ntBASIC18.12■□□□□ 0.49
CXCL12P48061 KRT18P65-201ENST00000439811 1286 ntBASIC18.12■□□□□ 0.49
CXCL12P48061 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.12■□□□□ 0.49
CXCL12P48061 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.12■□□□□ 0.49
CXCL12P48061 AC211476.1-201ENST00000503899 468 ntBASIC18.12■□□□□ 0.49
CXCL12P48061 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.12■□□□□ 0.49
CXCL12P48061 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC18.12■□□□□ 0.49
CXCL12P48061 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
CXCL12P48061 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.12■□□□□ 0.49
CXCL12P48061 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.12■□□□□ 0.49
CXCL12P48061 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.12■□□□□ 0.49
CXCL12P48061 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.12■□□□□ 0.49
CXCL12P48061 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.12■□□□□ 0.49
CXCL12P48061 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CXCL12P48061 MYLKP1-201ENST00000509077 1580 ntBASIC18.12■□□□□ 0.49
CXCL12P48061 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC18.12■□□□□ 0.49
CXCL12P48061 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CXCL12P48061 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL12P48061 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.11■□□□□ 0.49
CXCL12P48061 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL12P48061 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CXCL12P48061 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL12P48061 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL12P48061 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL12P48061 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CXCL12P48061 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms