Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19■□□□□ 0.63
PTPN9P43378 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19■□□□□ 0.63
PTPN9P43378 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
PTPN9P43378 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
PTPN9P43378 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 HBZP1-201ENST00000354915 429 ntBASIC18.99■□□□□ 0.63
PTPN9P43378 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.99■□□□□ 0.63
PTPN9P43378 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.99■□□□□ 0.63
PTPN9P43378 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.99■□□□□ 0.63
PTPN9P43378 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.99■□□□□ 0.63
PTPN9P43378 FLJ13224-201ENST00000313737 1514 ntBASIC18.99■□□□□ 0.63
PTPN9P43378 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.99■□□□□ 0.63
PTPN9P43378 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
PTPN9P43378 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.99■□□□□ 0.63
PTPN9P43378 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.99■□□□□ 0.63
PTPN9P43378 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN9P43378 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.98■□□□□ 0.63
PTPN9P43378 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 AC138028.4-201ENST00000564984 1845 ntBASIC18.98■□□□□ 0.63
PTPN9P43378 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN9P43378 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.98■□□□□ 0.63
PTPN9P43378 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.98■□□□□ 0.63
PTPN9P43378 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.98■□□□□ 0.63
PTPN9P43378 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.98■□□□□ 0.63
PTPN9P43378 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 AC112907.2-201ENST00000448639 330 ntBASIC18.98■□□□□ 0.63
PTPN9P43378 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN9P43378 KRT18P21-201ENST00000515767 1272 ntBASIC18.98■□□□□ 0.63
PTPN9P43378 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.98■□□□□ 0.63
PTPN9P43378 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.98■□□□□ 0.63
PTPN9P43378 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
PTPN9P43378 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
PTPN9P43378 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.98■□□□□ 0.63
PTPN9P43378 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.98■□□□□ 0.63
PTPN9P43378 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
PTPN9P43378 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN9P43378 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
PTPN9P43378 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
PTPN9P43378 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN9P43378 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.98■□□□□ 0.63
PTPN9P43378 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
PTPN9P43378 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.98■□□□□ 0.63
PTPN9P43378 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PTPN9P43378 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.97■□□□□ 0.63
PTPN9P43378 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.97■□□□□ 0.63
PTPN9P43378 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN9P43378 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN9P43378 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.97■□□□□ 0.63
PTPN9P43378 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN9P43378 FAM210CP-201ENST00000445714 574 ntBASIC18.97■□□□□ 0.63
PTPN9P43378 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.97■□□□□ 0.63
PTPN9P43378 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.97■□□□□ 0.63
PTPN9P43378 LINC01238-205ENST00000567549 1107 ntBASIC18.97■□□□□ 0.63
PTPN9P43378 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.97■□□□□ 0.63
PTPN9P43378 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.97■□□□□ 0.63
PTPN9P43378 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
PTPN9P43378 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN9P43378 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN9P43378 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN9P43378 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN9P43378 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms