Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.08■□□□□ 0.493e-7■■□□□ 13.2
YBX3P16989 PPP1R18-203ENST00000467662 1156 ntTSL 316.27■□□□□ 0.23e-7■■□□□ 13.2
YBX3P16989 PPP1R18-202ENST00000399199 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.373e-7■■□□□ 13.2
YBX3P16989 CNOT6-203ENST00000502447 552 ntTSL 323.29■■□□□ 1.322e-7■■□□□ 13.2
YBX3P16989 PTPN11-206ENST00000635652 588 ntTSL 317.14■□□□□ 0.332e-7■■□□□ 13.2
YBX3P16989 CNOT6-204ENST00000504343 706 ntTSL 35.07□□□□□ -1.62e-7■■□□□ 13.2
YBX3P16989 MACROD1-203ENST00000538595 868 ntTSL 333.51■■■□□ 2.953e-7■■□□□ 13.2
YBX3P16989 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.96■□□□□ 0.153e-6■■□□□ 13.2
YBX3P16989 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.039e-7■■□□□ 13.2
YBX3P16989 PLCD1-203ENST00000461445 3271 ntTSL 214.51□□□□□ -0.099e-7■■□□□ 13.2
YBX3P16989 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.119e-7■■□□□ 13.2
YBX3P16989 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC37.41■■■■□ 3.587e-11■■□□□ 13.2
YBX3P16989 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.827e-11■■□□□ 13.2
YBX3P16989 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC24.95■■□□□ 1.587e-11■■□□□ 13.2
YBX3P16989 AGTRAP-209ENST00000476512 942 ntTSL 323.89■■□□□ 1.417e-11■■□□□ 13.2
YBX3P16989 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC22.82■■□□□ 1.247e-11■■□□□ 13.2
YBX3P16989 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC21.62■■□□□ 1.057e-11■■□□□ 13.2
YBX3P16989 AGTRAP-210ENST00000491346 1116 ntTSL 520.96■□□□□ 0.957e-11■■□□□ 13.2
YBX3P16989 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC19.63■□□□□ 0.737e-11■■□□□ 13.2
YBX3P16989 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC19.32■□□□□ 0.687e-11■■□□□ 13.2
YBX3P16989 AGTRAP-208ENST00000476309 748 ntTSL 319.09■□□□□ 0.657e-11■■□□□ 13.2
YBX3P16989 AGTRAP-214ENST00000514733 919 ntTSL 317.51■□□□□ 0.397e-11■■□□□ 13.2
YBX3P16989 AGTRAP-213ENST00000513739 566 ntTSL 316.71■□□□□ 0.277e-11■■□□□ 13.2
YBX3P16989 AGTRAP-207ENST00000471765 717 ntTSL 39.88□□□□□ -0.837e-11■■□□□ 13.2
YBX3P16989 GLUL-210ENST00000484996 1369 ntTSL 326.12■■□□□ 1.772e-17■■□□□ 13.2
YBX3P16989 DOCK2-202ENST00000433448 446 ntTSL 411.31□□□□□ -0.61e-6■■□□□ 13.2
YBX3P16989 NUDT21-205ENST00000567110 607 ntTSL 214.24□□□□□ -0.138e-12■■□□□ 13.2
YBX3P16989 AP2S1-208ENST00000600964 458 ntTSL 1 (best)25.09■■□□□ 1.616e-8■■□□□ 13.1
YBX3P16989 RPL11-203ENST00000458455 721 ntTSL 1 (best)16.27■□□□□ 0.24e-77■■□□□ 13.1
YBX3P16989 RPL11-205ENST00000482370 879 ntTSL 1 (best)11.65□□□□□ -0.544e-77■■□□□ 13.1
YBX3P16989 RPL11-201ENST00000374550 634 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.64e-77■■□□□ 13.1
YBX3P16989 RPL11-202ENST00000443624 994 ntTSL 210.89□□□□□ -0.674e-77■■□□□ 13.1
YBX3P16989 COQ8A-207ENST00000485462 2141 ntTSL 1 (best)18.44■□□□□ 0.543e-6■■□□□ 13.1
YBX3P16989 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.34■□□□□ 0.214e-9■■□□□ 13.1
YBX3P16989 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.184e-9■■□□□ 13.1
YBX3P16989 KARS-212ENST00000570215 994 ntTSL 319.58■□□□□ 0.727e-13■■□□□ 13.1
YBX3P16989 KARS-207ENST00000566560 1231 ntTSL 1 (best)14.25□□□□□ -0.137e-13■■□□□ 13.1
YBX3P16989 KARS-210ENST00000568682 870 ntTSL 38.15□□□□□ -1.17e-13■■□□□ 13.1
YBX3P16989 KARS-206ENST00000566249 649 ntTSL 57.86□□□□□ -1.157e-13■■□□□ 13.1
YBX3P16989 DAP3-212ENST00000471214 1287 ntTSL 521.34■■□□□ 1.019e-11■■□□□ 13.1
YBX3P16989 DAP3-211ENST00000470830 439 ntTSL 313.59□□□□□ -0.239e-11■■□□□ 13.1
YBX3P16989 DAP3-222ENST00000496863 742 ntTSL 213.47□□□□□ -0.259e-11■■□□□ 13.1
YBX3P16989 DAP3-205ENST00000462002 716 ntTSL 313.42□□□□□ -0.269e-11■■□□□ 13.1
YBX3P16989 DAP3-224ENST00000497826 807 ntTSL 56.66□□□□□ -1.349e-11■■□□□ 13.1
YBX3P16989 DAP3-208ENST00000463575 550 ntTSL 56□□□□□ -1.459e-11■■□□□ 13.1
YBX3P16989 DAP3-213ENST00000471523 576 ntTSL 23.67□□□□□ -1.829e-11■■□□□ 13.1
YBX3P16989 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC20.3■□□□□ 0.842e-41■■□□□ 13.1
YBX3P16989 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.182e-8■■□□□ 13.1
YBX3P16989 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.03■□□□□ 0.642e-8■■□□□ 13.1
YBX3P16989 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.512e-8■■□□□ 13.1
YBX3P16989 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.422e-8■■□□□ 13.1
YBX3P16989 TNIP1-206ENST00000519339 1815 ntTSL 1 (best)17.22■□□□□ 0.352e-8■■□□□ 13.1
YBX3P16989 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.1■□□□□ 0.332e-8■■□□□ 13.1
YBX3P16989 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.06■□□□□ 0.322e-8■■□□□ 13.1
YBX3P16989 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.232e-8■■□□□ 13.1
YBX3P16989 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.11■□□□□ 0.012e-8■■□□□ 13.1
YBX3P16989 TNIP1-218ENST00000523338 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.312e-8■■□□□ 13.1
YBX3P16989 TNIP1-201ENST00000315050 2785 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.352e-8■■□□□ 13.1
YBX3P16989 COTL1-204ENST00000564662 713 ntTSL 227.55■■■□□ 22e-9■■□□□ 13.1
YBX3P16989 PLOD3-206ENST00000454310 1098 ntAPPRIS ALT2 TSL 519.41■□□□□ 0.73e-8■■□□□ 13.1
YBX3P16989 RPL14-206ENST00000465280 616 ntTSL 219.31■□□□□ 0.681e-323■■□□□ 13.1
YBX3P16989 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC25.98■■□□□ 1.754e-7■■□□□ 13.1
YBX3P16989 SMAD4-215ENST00000592911 475 ntTSL 512.36□□□□□ -0.434e-7■■□□□ 13.1
YBX3P16989 BCL2L13-214ENST00000543133 4975 ntTSL 2 BASIC13.03□□□□□ -0.321e-6■■□□□ 13.1
YBX3P16989 BCL2L13-201ENST00000317582 2992 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.331e-6■■□□□ 13.1
YBX3P16989 BCL2L13-217ENST00000618481 4961 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.341e-6■■□□□ 13.1
YBX3P16989 BCL2L13-202ENST00000337612 4905 ntTSL 2 BASIC12.82□□□□□ -0.361e-6■■□□□ 13.1
YBX3P16989 BCL2L13-207ENST00000418951 5062 ntTSL 3 BASIC12.31□□□□□ -0.441e-6■■□□□ 13.1
YBX3P16989 BCL2L13-204ENST00000399777 2677 ntTSL 1 (best)11.89□□□□□ -0.511e-6■■□□□ 13.1
YBX3P16989 BCL2L13-212ENST00000498133 2662 ntTSL 211.73□□□□□ -0.531e-6■■□□□ 13.1
YBX3P16989 BCL2L13-213ENST00000538149 4797 ntTSL 2 BASIC11.67□□□□□ -0.541e-6■■□□□ 13.1
YBX3P16989 BCL2L13-215ENST00000611738 4817 ntTSL 4 BASIC11.65□□□□□ -0.541e-6■■□□□ 13.1
YBX3P16989 BCL2L13-216ENST00000616863 4761 ntTSL 4 BASIC11.03□□□□□ -0.641e-6■■□□□ 13.1
YBX3P16989 BCL2L13-203ENST00000355028 4458 ntTSL 1 (best) BASIC9.95□□□□□ -0.821e-6■■□□□ 13.1
YBX3P16989 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC29.19■■■□□ 2.261e-10■■□□□ 13.1
YBX3P16989 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.89■□□□□ 0.781e-10■■□□□ 13.1
YBX3P16989 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.67■□□□□ 0.581e-10■■□□□ 13.1
YBX3P16989 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.491e-10■■□□□ 13.1
YBX3P16989 ZNF74-208ENST00000493734 3758 ntTSL 215.28■□□□□ 0.041e-10■■□□□ 13.1
YBX3P16989 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.011e-10■■□□□ 13.1
YBX3P16989 ZNF74-206ENST00000437275 3744 ntTSL 1 (best)14.43□□□□□ -0.11e-10■■□□□ 13.1
YBX3P16989 ZNF74-207ENST00000476678 3879 ntTSL 213.86□□□□□ -0.191e-10■■□□□ 13.1
YBX3P16989 RPL35A-208ENST00000485439 677 ntTSL 210.44□□□□□ -0.741e-79■■□□□ 13.1
YBX3P16989 RPL35A-201ENST00000329092 456 ntTSL 38.25□□□□□ -1.091e-79■■□□□ 13.1
YBX3P16989 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC25.83■■□□□ 1.731e-7■■□□□ 13.1
YBX3P16989 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.311e-7■■□□□ 13.1
YBX3P16989 FLNA-216ENST00000490936 5374 ntTSL 1 (best)16.22■□□□□ 0.192e-11■■□□□ 13.1
YBX3P16989 LARP4B-212ENST00000614908 1826 ntTSL 423.16■■□□□ 1.34e-7■■□□□ 13.1
YBX3P16989 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.254e-7■■□□□ 13.1
YBX3P16989 LARP4B-201ENST00000316157 5642 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.44e-7■■□□□ 13.1
YBX3P16989 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.582e-9■■□□□ 13.1
YBX3P16989 LRRC59-203ENST00000576448 1531 ntBASIC18.95■□□□□ 0.621e-6■■□□□ 13.1
YBX3P16989 PPP4C-204ENST00000562664 941 ntTSL 332.57■■■□□ 2.85e-9■■□□□ 13.1
YBX3P16989 COASY-204ENST00000585909 570 ntTSL 219.9■□□□□ 0.782e-8■■□□□ 13.1
YBX3P16989 COASY-207ENST00000587214 539 ntTSL 419.64■□□□□ 0.732e-8■■□□□ 13.1
YBX3P16989 COASY-205ENST00000586771 742 ntTSL 319.2■□□□□ 0.662e-8■■□□□ 13.1
YBX3P16989 COASY-203ENST00000585811 625 ntTSL 219.04■□□□□ 0.642e-8■■□□□ 13.1
YBX3P16989 COASY-208ENST00000587858 569 ntTSL 418.43■□□□□ 0.542e-8■■□□□ 13.1
YBX3P16989 COASY-206ENST00000587157 551 ntTSL 415.21■□□□□ 0.032e-8■■□□□ 13.1
YBX3P16989 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.386e-9■■□□□ 13.1
Retrieved 100 of 29,075 protein–RNA pairs in 270.1 ms