Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.58■■□□□ 1.05
HMGB1P09429 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.58■■□□□ 1.04
HMGB1P09429 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
HMGB1P09429 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
HMGB1P09429 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
HMGB1P09429 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
HMGB1P09429 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC21.58■■□□□ 1.04
HMGB1P09429 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC21.57■■□□□ 1.04
HMGB1P09429 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC21.57■■□□□ 1.04
HMGB1P09429 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB1P09429 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB1P09429 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.57■■□□□ 1.04
HMGB1P09429 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.57■■□□□ 1.04
HMGB1P09429 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB1P09429 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB1P09429 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB1P09429 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB1P09429 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB1P09429 NOC2LP2-201ENST00000407594 1944 ntBASIC21.57■■□□□ 1.04
HMGB1P09429 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB1P09429 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB1P09429 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB1P09429 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.57■■□□□ 1.04
HMGB1P09429 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.57■■□□□ 1.04
HMGB1P09429 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.57■■□□□ 1.04
HMGB1P09429 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
HMGB1P09429 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
HMGB1P09429 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB1P09429 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB1P09429 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC21.57■■□□□ 1.04
HMGB1P09429 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.57■■□□□ 1.04
HMGB1P09429 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
HMGB1P09429 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC21.57■■□□□ 1.04
HMGB1P09429 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB1P09429 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB1P09429 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
HMGB1P09429 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB1P09429 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB1P09429 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC21.56■■□□□ 1.04
HMGB1P09429 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB1P09429 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB1P09429 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB1P09429 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.56■■□□□ 1.04
HMGB1P09429 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
HMGB1P09429 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB1P09429 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.56■■□□□ 1.04
HMGB1P09429 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB1P09429 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB1P09429 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB1P09429 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB1P09429 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGB1P09429 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
HMGB1P09429 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
HMGB1P09429 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
HMGB1P09429 CD276-201ENST00000318424 2738 ntTSL 5 BASIC21.55■■□□□ 1.04
HMGB1P09429 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
HMGB1P09429 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
HMGB1P09429 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
HMGB1P09429 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
HMGB1P09429 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGB1P09429 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC21.54■■□□□ 1.04
HMGB1P09429 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
HMGB1P09429 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB1P09429 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB1P09429 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB1P09429 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.54■■□□□ 1.04
HMGB1P09429 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.54■■□□□ 1.04
HMGB1P09429 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB1P09429 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.54■■□□□ 1.04
HMGB1P09429 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.54■■□□□ 1.04
HMGB1P09429 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC21.54■■□□□ 1.04
HMGB1P09429 AC005521.1-201ENST00000393351 872 ntBASIC21.54■■□□□ 1.04
HMGB1P09429 RASA4DP-201ENST00000460726 1199 ntBASIC21.54■■□□□ 1.04
HMGB1P09429 AL441883.1-201ENST00000566170 1045 ntBASIC21.54■■□□□ 1.04
HMGB1P09429 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB1P09429 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
HMGB1P09429 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB1P09429 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB1P09429 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB1P09429 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB1P09429 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGB1P09429 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms