Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
RB1P06400 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RB1P06400 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RB1P06400 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.29■□□□□ 0.68
RB1P06400 URGCP-206ENST00000446958 365 ntTSL 2 BASIC19.29■□□□□ 0.68
RB1P06400 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RB1P06400 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
RB1P06400 AC112482.1-201ENST00000492080 688 ntBASIC19.29■□□□□ 0.68
RB1P06400 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.29■□□□□ 0.68
RB1P06400 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.29■□□□□ 0.68
RB1P06400 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.29■□□□□ 0.68
RB1P06400 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RB1P06400 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.29■□□□□ 0.68
RB1P06400 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RB1P06400 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.29■□□□□ 0.68
RB1P06400 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.29■□□□□ 0.68
RB1P06400 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.29■□□□□ 0.68
RB1P06400 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.29■□□□□ 0.68
RB1P06400 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RB1P06400 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RB1P06400 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.29■□□□□ 0.68
RB1P06400 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
RB1P06400 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RB1P06400 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RB1P06400 SDHAP2-201ENST00000455183 2001 ntBASIC19.29■□□□□ 0.68
RB1P06400 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
RB1P06400 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RB1P06400 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.28■□□□□ 0.68
RB1P06400 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RB1P06400 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.28■□□□□ 0.68
RB1P06400 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RB1P06400 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RB1P06400 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
RB1P06400 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
RB1P06400 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.28■□□□□ 0.68
RB1P06400 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RB1P06400 HMGN1P19-201ENST00000436976 333 ntBASIC19.28■□□□□ 0.68
RB1P06400 KRT18P65-201ENST00000439811 1286 ntBASIC19.28■□□□□ 0.68
RB1P06400 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.28■□□□□ 0.68
RB1P06400 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.28■□□□□ 0.68
RB1P06400 RNA5SP416-201ENST00000516838 111 ntBASIC19.28■□□□□ 0.68
RB1P06400 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.28■□□□□ 0.68
RB1P06400 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.28■□□□□ 0.68
RB1P06400 AC107918.4-202ENST00000641623 219 ntBASIC19.28■□□□□ 0.68
RB1P06400 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RB1P06400 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RB1P06400 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.28■□□□□ 0.68
RB1P06400 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RB1P06400 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
RB1P06400 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.27■□□□□ 0.68
RB1P06400 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RB1P06400 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
RB1P06400 AC004832.2-201ENST00000426397 482 ntBASIC19.27■□□□□ 0.68
RB1P06400 DHDH-204ENST00000523250 634 ntTSL 5 BASIC19.27■□□□□ 0.68
RB1P06400 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RB1P06400 NKAPP1-205ENST00000585790 367 ntBASIC19.27■□□□□ 0.68
RB1P06400 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC19.27■□□□□ 0.68
RB1P06400 AL355385.1-201ENST00000606123 409 ntBASIC19.27■□□□□ 0.68
RB1P06400 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.27■□□□□ 0.68
RB1P06400 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RB1P06400 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
RB1P06400 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
RB1P06400 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RB1P06400 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.27■□□□□ 0.67
RB1P06400 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
RB1P06400 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.27■□□□□ 0.67
RB1P06400 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
RB1P06400 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RB1P06400 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.26■□□□□ 0.67
RB1P06400 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RB1P06400 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
RB1P06400 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.26■□□□□ 0.67
RB1P06400 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RB1P06400 AC004967.1-201ENST00000453589 447 ntBASIC19.26■□□□□ 0.67
RB1P06400 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.26■□□□□ 0.67
RB1P06400 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.26■□□□□ 0.67
RB1P06400 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
RB1P06400 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.26■□□□□ 0.67
RB1P06400 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.26■□□□□ 0.67
RB1P06400 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.26■□□□□ 0.67
RB1P06400 UNC93B6-202ENST00000528242 690 ntBASIC19.26■□□□□ 0.67
RB1P06400 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.26■□□□□ 0.67
RB1P06400 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC19.26■□□□□ 0.67
RB1P06400 MTDHP4-201ENST00000600287 670 ntBASIC19.26■□□□□ 0.67
RB1P06400 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RB1P06400 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RB1P06400 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RB1P06400 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
RB1P06400 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
RB1P06400 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RB1P06400 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RB1P06400 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
RB1P06400 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RB1P06400 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
RB1P06400 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
RB1P06400 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
RB1P06400 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.25■□□□□ 0.67
RB1P06400 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RB1P06400 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RB1P06400 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms