Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC25.61■■□□□ 1.69
NPHP4O75161 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC25.61■■□□□ 1.69
NPHP4O75161 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC25.61■■□□□ 1.69
NPHP4O75161 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC25.61■■□□□ 1.69
NPHP4O75161 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC25.61■■□□□ 1.69
NPHP4O75161 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP4O75161 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP4O75161 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP4O75161 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
NPHP4O75161 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP4O75161 SDHAP2-201ENST00000455183 2001 ntBASIC25.6■■□□□ 1.69
NPHP4O75161 GOLGA6L17P-202ENST00000614358 1398 ntBASIC25.6■■□□□ 1.69
NPHP4O75161 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC25.6■■□□□ 1.69
NPHP4O75161 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP4O75161 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC25.6■■□□□ 1.69
NPHP4O75161 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC25.6■■□□□ 1.69
NPHP4O75161 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC25.6■■□□□ 1.69
NPHP4O75161 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
NPHP4O75161 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP4O75161 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC25.6■■□□□ 1.69
NPHP4O75161 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC25.6■■□□□ 1.69
NPHP4O75161 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC25.6■■□□□ 1.69
NPHP4O75161 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC25.6■■□□□ 1.69
NPHP4O75161 AC007967.3-201ENST00000434308 558 ntBASIC25.6■■□□□ 1.69
NPHP4O75161 VN2R19P-201ENST00000442399 1052 ntBASIC25.6■■□□□ 1.69
NPHP4O75161 AC112698.1-201ENST00000510299 916 ntBASIC25.6■■□□□ 1.69
NPHP4O75161 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP4O75161 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP4O75161 AC005498.2-205ENST00000593218 784 ntBASIC25.6■■□□□ 1.69
NPHP4O75161 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC25.6■■□□□ 1.69
NPHP4O75161 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC25.6■■□□□ 1.69
NPHP4O75161 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
NPHP4O75161 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
NPHP4O75161 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC25.59■■□□□ 1.69
NPHP4O75161 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC25.59■■□□□ 1.69
NPHP4O75161 CLDN5-201ENST00000403084 2357 ntBASIC25.59■■□□□ 1.69
NPHP4O75161 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC25.59■■□□□ 1.69
NPHP4O75161 KLK8-202ENST00000320838 456 ntTSL 5 BASIC25.59■■□□□ 1.69
NPHP4O75161 STOM-202ENST00000347359 870 ntTSL 2 BASIC25.59■■□□□ 1.69
NPHP4O75161 PRYP5-201ENST00000451909 266 ntBASIC25.59■■□□□ 1.69
NPHP4O75161 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC25.59■■□□□ 1.69
NPHP4O75161 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC25.59■■□□□ 1.69
NPHP4O75161 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC25.59■■□□□ 1.69
NPHP4O75161 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC25.59■■□□□ 1.69
NPHP4O75161 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC25.59■■□□□ 1.69
NPHP4O75161 LSM12-202ENST00000585388 942 ntTSL 3 BASIC25.59■■□□□ 1.69
NPHP4O75161 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC25.59■■□□□ 1.69
NPHP4O75161 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
NPHP4O75161 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
NPHP4O75161 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC25.59■■□□□ 1.69
NPHP4O75161 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC25.58■■□□□ 1.69
NPHP4O75161 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP4O75161 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC25.58■■□□□ 1.69
NPHP4O75161 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC25.58■■□□□ 1.69
NPHP4O75161 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP4O75161 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP4O75161 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP4O75161 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
NPHP4O75161 PDPK2P-202ENST00000562415 1191 ntBASIC25.58■■□□□ 1.69
NPHP4O75161 AC004817.3-201ENST00000602957 2129 ntBASIC25.58■■□□□ 1.69
NPHP4O75161 AC141586.3-201ENST00000562166 1838 ntBASIC25.58■■□□□ 1.69
NPHP4O75161 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
NPHP4O75161 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
NPHP4O75161 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
NPHP4O75161 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
NPHP4O75161 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC25.58■■□□□ 1.68
NPHP4O75161 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP4O75161 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC25.57■■□□□ 1.68
NPHP4O75161 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP4O75161 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP4O75161 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC25.57■■□□□ 1.68
NPHP4O75161 TAF8-206ENST00000472818 719 ntTSL 2 BASIC25.57■■□□□ 1.68
NPHP4O75161 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP4O75161 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC25.57■■□□□ 1.68
NPHP4O75161 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP4O75161 CCND1-203ENST00000536559 553 ntTSL 3 BASIC25.57■■□□□ 1.68
NPHP4O75161 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP4O75161 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP4O75161 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC25.57■■□□□ 1.68
NPHP4O75161 PALM-208ENST00000592155 2272 ntTSL 4 BASIC25.57■■□□□ 1.68
NPHP4O75161 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC25.57■■□□□ 1.68
NPHP4O75161 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
NPHP4O75161 AC092667.1-201ENST00000434301 2586 ntBASIC25.57■■□□□ 1.68
NPHP4O75161 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
NPHP4O75161 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
NPHP4O75161 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC25.56■■□□□ 1.68
NPHP4O75161 IGLL3P-201ENST00000412472 434 ntBASIC25.56■■□□□ 1.68
NPHP4O75161 SPDYE21P-201ENST00000413323 827 ntBASIC25.56■■□□□ 1.68
NPHP4O75161 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC25.56■■□□□ 1.68
NPHP4O75161 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC25.56■■□□□ 1.68
NPHP4O75161 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC25.56■■□□□ 1.68
NPHP4O75161 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
NPHP4O75161 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
NPHP4O75161 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
NPHP4O75161 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
NPHP4O75161 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
NPHP4O75161 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
NPHP4O75161 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
NPHP4O75161 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC25.55■■□□□ 1.68
NPHP4O75161 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC25.55■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms