Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.37■□□□□ 0.37
PROM1O43490 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
PROM1O43490 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
PROM1O43490 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PROM1O43490 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
PROM1O43490 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.37■□□□□ 0.37
PROM1O43490 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PROM1O43490 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.37■□□□□ 0.37
PROM1O43490 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 MIR3917-201ENST00000580971 93 ntBASIC17.37■□□□□ 0.37
PROM1O43490 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
PROM1O43490 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.37■□□□□ 0.37
PROM1O43490 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
PROM1O43490 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.37■□□□□ 0.37
PROM1O43490 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
PROM1O43490 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PROM1O43490 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.37■□□□□ 0.37
PROM1O43490 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PROM1O43490 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.36■□□□□ 0.37
PROM1O43490 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.36■□□□□ 0.37
PROM1O43490 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.36■□□□□ 0.37
PROM1O43490 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.36■□□□□ 0.37
PROM1O43490 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.36■□□□□ 0.37
PROM1O43490 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.36■□□□□ 0.37
PROM1O43490 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.36■□□□□ 0.37
PROM1O43490 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.36■□□□□ 0.37
PROM1O43490 AC139887.4-201ENST00000607877 719 ntBASIC17.36■□□□□ 0.37
PROM1O43490 AC011558.1-201ENST00000623459 338 ntBASIC17.36■□□□□ 0.37
PROM1O43490 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 ESPNP-201ENST00000270691 2015 ntBASIC17.36■□□□□ 0.37
PROM1O43490 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
PROM1O43490 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PROM1O43490 GMCL1P1-201ENST00000463439 1581 ntBASIC17.36■□□□□ 0.37
PROM1O43490 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
PROM1O43490 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.35■□□□□ 0.37
PROM1O43490 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PROM1O43490 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PROM1O43490 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.35■□□□□ 0.37
PROM1O43490 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PROM1O43490 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.35■□□□□ 0.37
PROM1O43490 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.35■□□□□ 0.37
PROM1O43490 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.35■□□□□ 0.37
PROM1O43490 AC135776.1-201ENST00000319817 2481 ntBASIC17.35■□□□□ 0.37
PROM1O43490 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PROM1O43490 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PROM1O43490 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.35■□□□□ 0.37
PROM1O43490 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PROM1O43490 KRT18P57-201ENST00000443599 1254 ntBASIC17.35■□□□□ 0.37
PROM1O43490 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PROM1O43490 YBX1P2-201ENST00000489612 999 ntBASIC17.35■□□□□ 0.37
PROM1O43490 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
PROM1O43490 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.35■□□□□ 0.37
PROM1O43490 AL441883.1-201ENST00000566170 1045 ntBASIC17.35■□□□□ 0.37
PROM1O43490 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
PROM1O43490 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PROM1O43490 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.35■□□□□ 0.37
PROM1O43490 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.35■□□□□ 0.37
PROM1O43490 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PROM1O43490 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PROM1O43490 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PROM1O43490 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.35■□□□□ 0.37
PROM1O43490 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms