Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.03■□□□□ 0.32
HMGN4O00479 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HMGN4O00479 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.03■□□□□ 0.32
HMGN4O00479 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HMGN4O00479 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 AC093010.1-201ENST00000473625 1624 ntBASIC17.03■□□□□ 0.32
HMGN4O00479 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
HMGN4O00479 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HMGN4O00479 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
HMGN4O00479 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGN4O00479 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.02■□□□□ 0.32
HMGN4O00479 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
HMGN4O00479 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGN4O00479 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGN4O00479 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
HMGN4O00479 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
HMGN4O00479 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGN4O00479 AL024508.2-201ENST00000607749 1894 ntBASIC17.02■□□□□ 0.32
HMGN4O00479 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGN4O00479 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGN4O00479 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGN4O00479 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HMGN4O00479 AC128688.1-201ENST00000487626 519 ntBASIC17.02■□□□□ 0.32
HMGN4O00479 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGN4O00479 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HMGN4O00479 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.02■□□□□ 0.32
HMGN4O00479 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.02■□□□□ 0.32
HMGN4O00479 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.02■□□□□ 0.31
HMGN4O00479 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
HMGN4O00479 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
HMGN4O00479 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
HMGN4O00479 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
HMGN4O00479 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
HMGN4O00479 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
HMGN4O00479 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.02■□□□□ 0.31
HMGN4O00479 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.02■□□□□ 0.31
HMGN4O00479 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HMGN4O00479 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
HMGN4O00479 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
HMGN4O00479 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.02■□□□□ 0.31
HMGN4O00479 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
HMGN4O00479 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGN4O00479 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.01■□□□□ 0.31
HMGN4O00479 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HMGN4O00479 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.01■□□□□ 0.31
HMGN4O00479 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
HMGN4O00479 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.01■□□□□ 0.31
HMGN4O00479 NAPSB-206ENST00000562112 1266 ntBASIC17.01■□□□□ 0.31
HMGN4O00479 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
HMGN4O00479 AC010240.3-201ENST00000607688 395 ntBASIC17.01■□□□□ 0.31
HMGN4O00479 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGN4O00479 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.01■□□□□ 0.31
HMGN4O00479 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
HMGN4O00479 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.01■□□□□ 0.31
HMGN4O00479 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.01■□□□□ 0.31
HMGN4O00479 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
HMGN4O00479 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGN4O00479 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGN4O00479 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.01■□□□□ 0.31
HMGN4O00479 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HMGN4O00479 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.01■□□□□ 0.31
HMGN4O00479 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17■□□□□ 0.31
HMGN4O00479 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17■□□□□ 0.31
HMGN4O00479 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 MMP23A-201ENST00000234610 1017 ntBASIC17■□□□□ 0.31
HMGN4O00479 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HMGN4O00479 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms