Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
TCRBV7S3A2A0A539 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 MIR1238-201ENST00000408483 83 ntBASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 TSPY15P-201ENST00000457163 923 ntBASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
TCRBV7S3A2A0A539 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 AC093010.1-201ENST00000473625 1624 ntBASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 AL355075.4-201ENST00000554988 638 ntBASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 AL024508.2-201ENST00000607749 1894 ntBASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
TCRBV7S3A2A0A539 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 MIR4785-201ENST00000585005 73 ntBASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 AC006116.8-202ENST00000587620 1550 ntBASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TCRBV7S3A2A0A539 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TCRBV7S3A2A0A539 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TCRBV7S3A2A0A539 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
TCRBV7S3A2A0A539 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.58■□□□□ 0.57
TCRBV7S3A2A0A539 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
TCRBV7S3A2A0A539 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 SNORA78-201ENST00000459373 127 ntBASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
TCRBV7S3A2A0A539 KRT8P7-201ENST00000533003 1432 ntBASIC18.57■□□□□ 0.56
TCRBV7S3A2A0A539 KRT8P9-201ENST00000558927 1449 ntBASIC18.57■□□□□ 0.56
TCRBV7S3A2A0A539 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TCRBV7S3A2A0A539 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms