Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 TSSC2-201ENST00000450217 709 ntBASIC19.12■□□□□ 0.65
USP3Q9Y6I4 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.12■□□□□ 0.65
USP3Q9Y6I4 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP3Q9Y6I4 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 AL353692.3-201ENST00000407031 1396 ntBASIC19.11■□□□□ 0.65
USP3Q9Y6I4 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 AP002383.4-201ENST00000442518 975 ntBASIC19.11■□□□□ 0.65
USP3Q9Y6I4 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 AC004263.2-201ENST00000617183 678 ntBASIC19.11■□□□□ 0.65
USP3Q9Y6I4 ESPNP-201ENST00000270691 2015 ntBASIC19.11■□□□□ 0.65
USP3Q9Y6I4 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 AC120498.9-201ENST00000339021 3867 ntBASIC19.11■□□□□ 0.65
USP3Q9Y6I4 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.11■□□□□ 0.65
USP3Q9Y6I4 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP3Q9Y6I4 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP3Q9Y6I4 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
USP3Q9Y6I4 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP3Q9Y6I4 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP3Q9Y6I4 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP3Q9Y6I4 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.1■□□□□ 0.65
USP3Q9Y6I4 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
USP3Q9Y6I4 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.1■□□□□ 0.65
USP3Q9Y6I4 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
USP3Q9Y6I4 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
USP3Q9Y6I4 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
USP3Q9Y6I4 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 AL354751.1-201ENST00000412768 1863 ntBASIC19.09■□□□□ 0.65
USP3Q9Y6I4 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 CHCHD2P8-201ENST00000429873 447 ntBASIC19.09■□□□□ 0.65
USP3Q9Y6I4 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 MIR3180-1-201ENST00000580374 94 ntBASIC19.09■□□□□ 0.65
USP3Q9Y6I4 MIR3180-3-201ENST00000584616 94 ntBASIC19.09■□□□□ 0.65
USP3Q9Y6I4 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
USP3Q9Y6I4 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
USP3Q9Y6I4 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.08■□□□□ 0.65
USP3Q9Y6I4 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
USP3Q9Y6I4 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP3Q9Y6I4 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP3Q9Y6I4 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP3Q9Y6I4 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.08■□□□□ 0.65
USP3Q9Y6I4 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
USP3Q9Y6I4 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP3Q9Y6I4 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP3Q9Y6I4 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.08■□□□□ 0.64
USP3Q9Y6I4 RN7SL606P-201ENST00000472779 293 ntBASIC19.08■□□□□ 0.64
USP3Q9Y6I4 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.08■□□□□ 0.64
USP3Q9Y6I4 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP3Q9Y6I4 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms