Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 MIR149-201ENST00000384879 89 ntBASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 RASA4DP-201ENST00000460726 1199 ntBASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC17.72■□□□□ 0.43
CUEDC1Q9NWM3 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 AC009102.3-201ENST00000623118 1491 ntBASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 AL450487.1-201ENST00000426799 995 ntBASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 MIR3180-4-201ENST00000582223 153 ntBASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CUEDC1Q9NWM3 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
CUEDC1Q9NWM3 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CUEDC1Q9NWM3 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CUEDC1Q9NWM3 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 AL031133.1-201ENST00000406807 723 ntBASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 AC092647.4-201ENST00000457211 535 ntBASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 AC034232.1-201ENST00000506026 1064 ntBASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CUEDC1Q9NWM3 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 STARP1-201ENST00000397973 869 ntBASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.69■□□□□ 0.42
CUEDC1Q9NWM3 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms