Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BLOC1S4Q9NUP1 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
BLOC1S4Q9NUP1 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BLOC1S4Q9NUP1 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
BLOC1S4Q9NUP1 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.36■□□□□ 0.85
BLOC1S4Q9NUP1 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 AL359075.1-203ENST00000462729 1002 ntBASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 DUX4L26-201ENST00000489078 1255 ntBASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
BLOC1S4Q9NUP1 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 AC138028.4-201ENST00000564984 1845 ntBASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 AC132938.6-201ENST00000623828 1655 ntBASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 AC018470.1-201ENST00000624790 3129 ntBASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
BLOC1S4Q9NUP1 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 FAM8A6P-201ENST00000407496 1135 ntBASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 HOMER2P1-201ENST00000455653 964 ntBASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 KRT18P21-201ENST00000515767 1272 ntBASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 LTBR-211ENST00000543190 785 ntTSL 3 BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
BLOC1S4Q9NUP1 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
BLOC1S4Q9NUP1 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
BLOC1S4Q9NUP1 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
BLOC1S4Q9NUP1 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.33■□□□□ 0.84
BLOC1S4Q9NUP1 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.33■□□□□ 0.84
BLOC1S4Q9NUP1 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.33■□□□□ 0.84
BLOC1S4Q9NUP1 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
BLOC1S4Q9NUP1 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
BLOC1S4Q9NUP1 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
BLOC1S4Q9NUP1 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
BLOC1S4Q9NUP1 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
BLOC1S4Q9NUP1 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms