Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AC097488.1-201ENST00000507834 756 ntBASIC13.75□□□□□ -0.21
LINC00477Q96M19 NUDT16P1-203ENST00000513809 620 ntBASIC13.75□□□□□ -0.21
LINC00477Q96M19 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 GPAT2P1-201ENST00000444924 1672 ntBASIC13.75□□□□□ -0.21
LINC00477Q96M19 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
LINC00477Q96M19 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
LINC00477Q96M19 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 MIR3180-5-201ENST00000583743 153 ntBASIC13.74□□□□□ -0.21
LINC00477Q96M19 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 REXO1L9P-201ENST00000604264 2108 ntBASIC13.74□□□□□ -0.21
LINC00477Q96M19 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
LINC00477Q96M19 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC13.74□□□□□ -0.21
LINC00477Q96M19 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00477Q96M19 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00477Q96M19 KRT8P7-201ENST00000533003 1432 ntBASIC13.73□□□□□ -0.21
LINC00477Q96M19 KRT8P50-201ENST00000562022 1438 ntBASIC13.73□□□□□ -0.21
LINC00477Q96M19 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00477Q96M19 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00477Q96M19 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00477Q96M19 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00477Q96M19 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00477Q96M19 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00477Q96M19 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 KRT18P29-201ENST00000397031 1267 ntBASIC13.73□□□□□ -0.21
LINC00477Q96M19 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00477Q96M19 MNT-208ENST00000575394 606 ntTSL 4 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 MIR4651-201ENST00000582622 73 ntBASIC13.73□□□□□ -0.21
LINC00477Q96M19 ITM2C-210ENST00000620962 501 ntBASIC13.73□□□□□ -0.21
LINC00477Q96M19 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00477Q96M19 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00477Q96M19 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00477Q96M19 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00477Q96M19 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00477Q96M19 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
LINC00477Q96M19 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
LINC00477Q96M19 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 OR6D1P-203ENST00000641209 4860 ntBASIC13.72□□□□□ -0.21
LINC00477Q96M19 CD276-203ENST00000537340 2439 ntTSL 2 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
LINC00477Q96M19 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
LINC00477Q96M19 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms