Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.68■□□□□ 0.9
CDK5RAP3Q96JB5 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDK5RAP3Q96JB5 AL138966.2-201ENST00000621997 464 ntBASIC20.68■□□□□ 0.9
CDK5RAP3Q96JB5 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CDK5RAP3Q96JB5 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
CDK5RAP3Q96JB5 AC092865.7-201ENST00000641832 219 ntBASIC20.68■□□□□ 0.9
CDK5RAP3Q96JB5 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.68■□□□□ 0.9
CDK5RAP3Q96JB5 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDK5RAP3Q96JB5 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDK5RAP3Q96JB5 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.68■□□□□ 0.9
CDK5RAP3Q96JB5 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDK5RAP3Q96JB5 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CDK5RAP3Q96JB5 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CDK5RAP3Q96JB5 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 TERF1P1-201ENST00000311003 1181 ntBASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 SEC1P-202ENST00000473944 940 ntBASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 MIR3180-4-201ENST00000582223 153 ntBASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 AC140113.3-201ENST00000605663 199 ntBASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
CDK5RAP3Q96JB5 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 MADD-208ENST00000405573 1823 ntTSL 5 BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDK5RAP3Q96JB5 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 GMCL1P1-201ENST00000463439 1581 ntBASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 AC005521.1-201ENST00000393351 872 ntBASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 AL023973.1-201ENST00000624619 620 ntBASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CDK5RAP3Q96JB5 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms