Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NKX2-3Q8TAU0 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.66■■□□□ 1.06
NKX2-3Q8TAU0 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 MIR149-201ENST00000384879 89 ntBASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 AC034232.1-201ENST00000506026 1064 ntBASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 AL662844.1-201ENST00000546340 181 ntBASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 MIR3180-4-201ENST00000582223 153 ntBASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NKX2-3Q8TAU0 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NKX2-3Q8TAU0 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NKX2-3Q8TAU0 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 TSPY19P-201ENST00000418461 509 ntBASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 TSPY18P-201ENST00000441642 509 ntBASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 AL121772.3-201ENST00000610840 674 ntBASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 AC139530.3-201ENST00000620344 690 ntBASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 AC009102.3-201ENST00000623118 1491 ntBASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
NKX2-3Q8TAU0 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 MIR662-201ENST00000384847 95 ntBASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 AC106795.1-205ENST00000512851 1056 ntBASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NKX2-3Q8TAU0 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NKX2-3Q8TAU0 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NKX2-3Q8TAU0 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
NKX2-3Q8TAU0 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NKX2-3Q8TAU0 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NKX2-3Q8TAU0 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC21.62■■□□□ 1.05
NKX2-3Q8TAU0 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NKX2-3Q8TAU0 AC135776.1-201ENST00000319817 2481 ntBASIC21.62■■□□□ 1.05
NKX2-3Q8TAU0 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NKX2-3Q8TAU0 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NKX2-3Q8TAU0 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NKX2-3Q8TAU0 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
NKX2-3Q8TAU0 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NKX2-3Q8TAU0 AC091304.2-201ENST00000564639 760 ntBASIC21.62■■□□□ 1.05
NKX2-3Q8TAU0 IL11-204ENST00000590625 1028 ntTSL 2 BASIC21.62■■□□□ 1.05
NKX2-3Q8TAU0 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms