Protein–RNA interactions for Protein: Q8N1V8

LINC01561, Uncharacterized protein encoded by LINC01561, humanhuman

Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01561Q8N1V8 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC01561Q8N1V8 FSCN1P1-201ENST00000568912 1481 ntBASIC12.32□□□□□ -0.44
LINC01561Q8N1V8 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC01561Q8N1V8 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC01561Q8N1V8 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
LINC01561Q8N1V8 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC12.32□□□□□ -0.44
LINC01561Q8N1V8 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC12.32□□□□□ -0.44
LINC01561Q8N1V8 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC01561Q8N1V8 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LINC01561Q8N1V8 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LINC01561Q8N1V8 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC12.32□□□□□ -0.44
LINC01561Q8N1V8 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 KIRREL3-AS3-201ENST00000404882 831 ntBASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 ELP6-205ENST00000439305 880 ntTSL 2 BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 AC009102.3-201ENST00000623118 1491 ntBASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 AC141586.5-201ENST00000624546 2050 ntBASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
LINC01561Q8N1V8 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 AC006116.8-202ENST00000587620 1550 ntBASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 PHGDH-209ENST00000641074 1780 ntBASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 STK4-201ENST00000372801 2038 ntTSL 2 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 AC093010.1-201ENST00000473625 1624 ntBASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 MMAB-206ENST00000540016 945 ntTSL 3 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 MIR6786-201ENST00000616843 113 ntBASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 AL163051.1-201ENST00000569214 1512 ntBASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 AC096733.2-201ENST00000609937 1394 ntBASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
LINC01561Q8N1V8 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC01561Q8N1V8 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC01561Q8N1V8 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC01561Q8N1V8 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC01561Q8N1V8 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC01561Q8N1V8 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC01561Q8N1V8 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC01561Q8N1V8 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC01561Q8N1V8 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC01561Q8N1V8 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC01561Q8N1V8 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC01561Q8N1V8 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms