Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.96■□□□□ 0.31
NUP54Q7Z3B4 AL157888.1-201ENST00000631930 593 ntBASIC16.96■□□□□ 0.31
NUP54Q7Z3B4 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUP54Q7Z3B4 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
NUP54Q7Z3B4 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUP54Q7Z3B4 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.96■□□□□ 0.31
NUP54Q7Z3B4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.96■□□□□ 0.31
NUP54Q7Z3B4 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUP54Q7Z3B4 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUP54Q7Z3B4 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
NUP54Q7Z3B4 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
NUP54Q7Z3B4 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.96■□□□□ 0.31
NUP54Q7Z3B4 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
NUP54Q7Z3B4 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
NUP54Q7Z3B4 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
NUP54Q7Z3B4 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
NUP54Q7Z3B4 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
NUP54Q7Z3B4 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
NUP54Q7Z3B4 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 MIR149-201ENST00000384879 89 ntBASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 AC010331.1-201ENST00000611423 582 ntBASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NUP54Q7Z3B4 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 KRT18P38-201ENST00000449496 1282 ntBASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 NTF6B-201ENST00000591913 560 ntBASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 AL499627.1-201ENST00000569373 2188 ntBASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 AL162741.1-201ENST00000565563 1558 ntBASIC16.94■□□□□ 0.3
NUP54Q7Z3B4 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NUP54Q7Z3B4 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.93■□□□□ 0.3
NUP54Q7Z3B4 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
NUP54Q7Z3B4 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NUP54Q7Z3B4 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
NUP54Q7Z3B4 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.93■□□□□ 0.3
NUP54Q7Z3B4 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
NUP54Q7Z3B4 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
NUP54Q7Z3B4 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms