Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
ZNF549Q6P9A3 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 HMGA1P5-201ENST00000412453 271 ntBASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 AC087499.1-201ENST00000418141 1075 ntBASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 SEC1P-202ENST00000473944 940 ntBASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 LINC01126-201ENST00000623515 1646 ntBASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 AL096828.2-201ENST00000567259 1965 ntBASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 AC008764.6-201ENST00000595909 2069 ntBASIC18.18■□□□□ 0.5
ZNF549Q6P9A3 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 AC010240.3-201ENST00000607688 395 ntBASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.17■□□□□ 0.5
ZNF549Q6P9A3 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 AC005332.8-201ENST00000622750 2735 ntBASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
ZNF549Q6P9A3 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms