Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF43Q68DV7 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.22■□□□□ 0.67
RNF43Q68DV7 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.22■□□□□ 0.67
RNF43Q68DV7 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF43Q68DV7 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF43Q68DV7 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF43Q68DV7 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RNF43Q68DV7 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RNF43Q68DV7 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
RNF43Q68DV7 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF43Q68DV7 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
RNF43Q68DV7 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF43Q68DV7 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF43Q68DV7 SPDYE15P-201ENST00000424157 909 ntBASIC19.21■□□□□ 0.67
RNF43Q68DV7 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
RNF43Q68DV7 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.21■□□□□ 0.67
RNF43Q68DV7 AC008556.1-201ENST00000610908 2040 ntBASIC19.21■□□□□ 0.67
RNF43Q68DV7 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.21■□□□□ 0.67
RNF43Q68DV7 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
RNF43Q68DV7 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF43Q68DV7 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF43Q68DV7 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
RNF43Q68DV7 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RNF43Q68DV7 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF43Q68DV7 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.21■□□□□ 0.67
RNF43Q68DV7 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.2■□□□□ 0.66
RNF43Q68DV7 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.2■□□□□ 0.66
RNF43Q68DV7 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
RNF43Q68DV7 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
RNF43Q68DV7 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 KRT8P7-201ENST00000533003 1432 ntBASIC19.2■□□□□ 0.66
RNF43Q68DV7 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 MIR564-202ENST00000385049 94 ntBASIC19.2■□□□□ 0.66
RNF43Q68DV7 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
RNF43Q68DV7 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.2■□□□□ 0.66
RNF43Q68DV7 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.2■□□□□ 0.66
RNF43Q68DV7 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.2■□□□□ 0.66
RNF43Q68DV7 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
RNF43Q68DV7 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
RNF43Q68DV7 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.2■□□□□ 0.66
RNF43Q68DV7 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
RNF43Q68DV7 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RNF43Q68DV7 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RNF43Q68DV7 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RNF43Q68DV7 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RNF43Q68DV7 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RNF43Q68DV7 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RNF43Q68DV7 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
RNF43Q68DV7 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RNF43Q68DV7 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
RNF43Q68DV7 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RNF43Q68DV7 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
RNF43Q68DV7 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RNF43Q68DV7 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RNF43Q68DV7 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.19■□□□□ 0.66
RNF43Q68DV7 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RNF43Q68DV7 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.19■□□□□ 0.66
RNF43Q68DV7 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.19■□□□□ 0.66
RNF43Q68DV7 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.19■□□□□ 0.66
RNF43Q68DV7 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.19■□□□□ 0.66
RNF43Q68DV7 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.19■□□□□ 0.66
RNF43Q68DV7 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
RNF43Q68DV7 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
RNF43Q68DV7 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
RNF43Q68DV7 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RNF43Q68DV7 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
RNF43Q68DV7 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RNF43Q68DV7 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms