Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.06■□□□□ 0.32
RFX4Q33E94 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
RFX4Q33E94 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
RFX4Q33E94 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.06■□□□□ 0.32
RFX4Q33E94 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
RFX4Q33E94 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.06■□□□□ 0.32
RFX4Q33E94 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
RFX4Q33E94 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RFX4Q33E94 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RFX4Q33E94 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
RFX4Q33E94 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.05■□□□□ 0.32
RFX4Q33E94 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
RFX4Q33E94 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
RFX4Q33E94 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RFX4Q33E94 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RFX4Q33E94 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RFX4Q33E94 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
RFX4Q33E94 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
RFX4Q33E94 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
RFX4Q33E94 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RFX4Q33E94 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.05■□□□□ 0.32
RFX4Q33E94 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.05■□□□□ 0.32
RFX4Q33E94 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
RFX4Q33E94 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.05■□□□□ 0.32
RFX4Q33E94 HLA-L-209ENST00000420110 1011 ntBASIC17.05■□□□□ 0.32
RFX4Q33E94 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.05■□□□□ 0.32
RFX4Q33E94 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.05■□□□□ 0.32
RFX4Q33E94 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RFX4Q33E94 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.05■□□□□ 0.32
RFX4Q33E94 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.05■□□□□ 0.32
RFX4Q33E94 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
RFX4Q33E94 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.05■□□□□ 0.32
RFX4Q33E94 MYLKP1-201ENST00000509077 1580 ntBASIC17.05■□□□□ 0.32
RFX4Q33E94 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.05■□□□□ 0.32
RFX4Q33E94 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
RFX4Q33E94 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.05■□□□□ 0.32
RFX4Q33E94 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RFX4Q33E94 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
RFX4Q33E94 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RFX4Q33E94 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RFX4Q33E94 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
RFX4Q33E94 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.05■□□□□ 0.32
RFX4Q33E94 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 KRT8P3-201ENST00000519669 1449 ntBASIC17.04■□□□□ 0.32
RFX4Q33E94 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
RFX4Q33E94 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.04■□□□□ 0.32
RFX4Q33E94 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.04■□□□□ 0.32
RFX4Q33E94 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.04■□□□□ 0.32
RFX4Q33E94 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.04■□□□□ 0.32
RFX4Q33E94 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.04■□□□□ 0.32
RFX4Q33E94 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.04■□□□□ 0.32
RFX4Q33E94 KRT16P5-201ENST00000455284 522 ntBASIC17.04■□□□□ 0.32
RFX4Q33E94 AC026366.1-201ENST00000488803 879 ntBASIC17.04■□□□□ 0.32
RFX4Q33E94 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 Z85996.1-201ENST00000494644 937 ntBASIC17.04■□□□□ 0.32
RFX4Q33E94 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.04■□□□□ 0.32
RFX4Q33E94 AC124067.4-201ENST00000519691 2379 ntBASIC17.04■□□□□ 0.32
RFX4Q33E94 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.04■□□□□ 0.32
RFX4Q33E94 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.04■□□□□ 0.32
RFX4Q33E94 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.04■□□□□ 0.32
RFX4Q33E94 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.04■□□□□ 0.32
RFX4Q33E94 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RFX4Q33E94 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RFX4Q33E94 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RFX4Q33E94 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
RFX4Q33E94 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
RFX4Q33E94 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RFX4Q33E94 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
RFX4Q33E94 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.03■□□□□ 0.32
RFX4Q33E94 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
RFX4Q33E94 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RFX4Q33E94 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
RFX4Q33E94 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RFX4Q33E94 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
RFX4Q33E94 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.03■□□□□ 0.32
RFX4Q33E94 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
RFX4Q33E94 POU5F1P3-201ENST00000428824 1078 ntBASIC17.03■□□□□ 0.32
RFX4Q33E94 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC17.03■□□□□ 0.32
RFX4Q33E94 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms