Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC21.17■□□□□ 0.98
ERCC3P19447 TPM1-218ENST00000559281 851 ntTSL 5 BASIC21.17■□□□□ 0.98
ERCC3P19447 BMF-207ENST00000559701 630 ntTSL 3 BASIC21.17■□□□□ 0.98
ERCC3P19447 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.17■□□□□ 0.98
ERCC3P19447 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
ERCC3P19447 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC21.17■□□□□ 0.98
ERCC3P19447 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ERCC3P19447 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC21.17■□□□□ 0.98
ERCC3P19447 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.17■□□□□ 0.98
ERCC3P19447 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ERCC3P19447 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ERCC3P19447 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ERCC3P19447 Z98044.1-201ENST00000632503 1764 ntBASIC21.17■□□□□ 0.98
ERCC3P19447 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.17■□□□□ 0.98
ERCC3P19447 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
ERCC3P19447 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ERCC3P19447 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ERCC3P19447 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ERCC3P19447 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.17■□□□□ 0.98
ERCC3P19447 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC21.16■□□□□ 0.98
ERCC3P19447 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
ERCC3P19447 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC3P19447 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC21.16■□□□□ 0.98
ERCC3P19447 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC3P19447 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC3P19447 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC3P19447 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC3P19447 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC3P19447 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC3P19447 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
ERCC3P19447 DFFB-203ENST00000341385 572 ntTSL 5 BASIC21.16■□□□□ 0.98
ERCC3P19447 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC3P19447 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC3P19447 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC3P19447 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC21.16■□□□□ 0.98
ERCC3P19447 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC21.16■□□□□ 0.98
ERCC3P19447 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC3P19447 AP002469.2-201ENST00000531724 424 ntBASIC21.16■□□□□ 0.98
ERCC3P19447 PPOX-214ENST00000535223 664 ntTSL 3 BASIC21.16■□□□□ 0.98
ERCC3P19447 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC21.16■□□□□ 0.98
ERCC3P19447 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC3P19447 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC3P19447 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC3P19447 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
ERCC3P19447 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC3P19447 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
ERCC3P19447 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.15■□□□□ 0.98
ERCC3P19447 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.15■□□□□ 0.98
ERCC3P19447 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC3P19447 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC3P19447 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC3P19447 AL161938.1-201ENST00000569833 2180 ntBASIC21.15■□□□□ 0.98
ERCC3P19447 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC3P19447 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC3P19447 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC3P19447 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.15■□□□□ 0.98
ERCC3P19447 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.15■□□□□ 0.98
ERCC3P19447 KRT16P4-201ENST00000453883 522 ntBASIC21.15■□□□□ 0.98
ERCC3P19447 BET1L-206ENST00000486280 665 ntTSL 3 BASIC21.15■□□□□ 0.98
ERCC3P19447 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.15■□□□□ 0.98
ERCC3P19447 AL353801.3-201ENST00000609898 542 ntBASIC21.15■□□□□ 0.98
ERCC3P19447 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC3P19447 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC3P19447 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC3P19447 TNXA-203ENST00000507684 2038 ntBASIC21.15■□□□□ 0.98
ERCC3P19447 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
ERCC3P19447 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.15■□□□□ 0.98
ERCC3P19447 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
ERCC3P19447 AL357033.4-201ENST00000617703 1807 ntBASIC21.15■□□□□ 0.98
ERCC3P19447 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC3P19447 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC3P19447 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
ERCC3P19447 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
ERCC3P19447 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
ERCC3P19447 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC21.14■□□□□ 0.98
ERCC3P19447 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
ERCC3P19447 KRT8P50-201ENST00000562022 1438 ntBASIC21.14■□□□□ 0.98
ERCC3P19447 AL353692.3-201ENST00000407031 1396 ntBASIC21.14■□□□□ 0.98
ERCC3P19447 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
ERCC3P19447 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
ERCC3P19447 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.14■□□□□ 0.97
ERCC3P19447 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC3P19447 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
ERCC3P19447 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC3P19447 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
ERCC3P19447 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
ERCC3P19447 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC3P19447 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC3P19447 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC21.14■□□□□ 0.97
ERCC3P19447 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.14■□□□□ 0.97
ERCC3P19447 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC3P19447 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC3P19447 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC21.14■□□□□ 0.97
ERCC3P19447 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC21.14■□□□□ 0.97
ERCC3P19447 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC3P19447 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
ERCC3P19447 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC3P19447 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC3P19447 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC3P19447 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms