Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SLC48A1-208ENST00000551301 1070 ntTSL 227.14■■□□□ 1.942e-7■■□□□ 13.2
YBX3P16989 SLC48A1-207ENST00000549243 577 ntTSL 326.34■■□□□ 1.812e-7■■□□□ 13.2
YBX3P16989 SLC48A1-206ENST00000548498 618 ntTSL 313.88□□□□□ -0.192e-7■■□□□ 13.2
YBX3P16989 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC6.42□□□□□ -1.382e-7■■□□□ 13.2
YBX3P16989 CTDNEP1-212ENST00000576613 606 ntTSL 316.31■□□□□ 0.22e-6■■□□□ 13.2
YBX3P16989 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC19.27■□□□□ 0.684e-15■■□□□ 13.2
YBX3P16989 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.644e-15■■□□□ 13.2
YBX3P16989 ZNF124-205ENST00000491848 701 ntTSL 315.99■□□□□ 0.154e-15■■□□□ 13.2
YBX3P16989 ZNF124-201ENST00000340684 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.134e-15■■□□□ 13.2
YBX3P16989 ZNF124-202ENST00000472531 2243 ntTSL 2 BASIC13.65□□□□□ -0.224e-15■■□□□ 13.2
YBX3P16989 SRRT-204ENST00000448764 1607 ntTSL 519.75■□□□□ 0.752e-6■■□□□ 13.2
YBX3P16989 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.123e-7■■□□□ 13.2
YBX3P16989 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC23.12■■□□□ 1.291e-9■■□□□ 13.2
YBX3P16989 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.53■□□□□ 0.881e-9■■□□□ 13.2
YBX3P16989 KIF13A-201ENST00000259711 5941 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.285e-7■■□□□ 13.2
YBX3P16989 KIF13A-213ENST00000636847 5538 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.85e-7■■□□□ 13.2
YBX3P16989 KIF13A-203ENST00000378814 6924 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.895e-7■■□□□ 13.2
YBX3P16989 KIF13A-204ENST00000378826 5747 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.915e-7■■□□□ 13.2
YBX3P16989 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.235e-7■■□□□ 13.2
YBX3P16989 UBE2M-205ENST00000599829 447 ntTSL 310.73□□□□□ -0.693e-10■■□□□ 13.2
YBX3P16989 UBE2M-202ENST00000593801 323 ntTSL 310.66□□□□□ -0.73e-10■■□□□ 13.2
YBX3P16989 STAG2-218ENST00000483575 864 ntTSL 514.16□□□□□ -0.142e-7■■□□□ 13.2
YBX3P16989 STAG2-211ENST00000455404 2089 ntTSL 511.22□□□□□ -0.612e-7■■□□□ 13.2
YBX3P16989 STAG2-216ENST00000471107 709 ntTSL 58.92□□□□□ -0.982e-7■■□□□ 13.2
YBX3P16989 STAG2-214ENST00000466748 873 ntTSL 58.51□□□□□ -1.052e-7■■□□□ 13.2
YBX3P16989 AGO2-205ENST00000519980 3141 ntTSL 1 (best) BASIC12.74□□□□□ -0.376e-7■■□□□ 13.2
YBX3P16989 AGO2-209ENST00000523609 3050 ntTSL 1 (best)12.07□□□□□ -0.486e-7■■□□□ 13.2
YBX3P16989 ARPC1B-220ENST00000491294 1051 ntTSL 523.7■■□□□ 1.385e-9■■□□□ 13.2
YBX3P16989 BTG1-201ENST00000256015 4680 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.274e-13■■□□□ 13.2
YBX3P16989 HSPA5-201ENST00000324460 3908 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.692e-34■■□□□ 13.2
YBX3P16989 PHB2-204ENST00000536316 739 ntTSL 520.39■□□□□ 0.852e-16■■□□□ 13.2
YBX3P16989 RUVBL2-205ENST00000595002 546 ntTSL 214.58□□□□□ -0.086e-12■■□□□ 13.2
YBX3P16989 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.288e-7■■□□□ 13.2
YBX3P16989 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.288e-7■■□□□ 13.2
YBX3P16989 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.91□□□□□ -1.625e-8■■□□□ 13.2
YBX3P16989 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.266e-9■■□□□ 13.2
YBX3P16989 APEX1-205ENST00000553555 1603 ntTSL 1 (best)16.27■□□□□ 0.26e-9■■□□□ 13.2
YBX3P16989 APEX1-210ENST00000555414 1437 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.186e-9■■□□□ 13.2
YBX3P16989 APEX1-202ENST00000398030 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.196e-9■■□□□ 13.2
YBX3P16989 APEX1-216ENST00000557159 1803 ntTSL 213.69□□□□□ -0.226e-9■■□□□ 13.2
YBX3P16989 APEX1-214ENST00000557054 888 ntTSL 5 BASIC10.87□□□□□ -0.676e-9■■□□□ 13.2
YBX3P16989 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC33.44■■■□□ 2.944e-54■■□□□ 13.2
YBX3P16989 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.634e-54■■□□□ 13.2
YBX3P16989 UBA52-207ENST00000596273 764 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.144e-54■■□□□ 13.2
YBX3P16989 UBA52-201ENST00000430157 572 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.324e-54■■□□□ 13.2
YBX3P16989 UBA52-205ENST00000595683 779 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.394e-54■■□□□ 13.2
YBX3P16989 UBA52-202ENST00000442744 2845 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.714e-54■■□□□ 13.2
YBX3P16989 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC18.07■□□□□ 0.484e-8■■□□□ 13.2
YBX3P16989 BCCIP-201ENST00000278100 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.134e-8■■□□□ 13.2
YBX3P16989 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC13.88□□□□□ -0.194e-8■■□□□ 13.2
YBX3P16989 DNAJC6-207ENST00000494710 1621 ntTSL 531.83■■■□□ 2.695e-8■■□□□ 13.2
YBX3P16989 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.592e-8■■□□□ 13.2
YBX3P16989 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.542e-8■■□□□ 13.2
YBX3P16989 RPA3-204ENST00000406109 434 ntTSL 3 BASIC8.88□□□□□ -0.992e-8■■□□□ 13.2
YBX3P16989 RPA3-207ENST00000483031 641 ntTSL 27.55□□□□□ -1.22e-8■■□□□ 13.2
YBX3P16989 RPA3-203ENST00000401447 414 ntTSL 3 BASIC5.65□□□□□ -1.52e-8■■□□□ 13.2
YBX3P16989 GSTP1-206ENST00000495996 221 ntTSL 213.18□□□□□ -0.32e-40■■□□□ 13.2
YBX3P16989 PSMA3-207ENST00000554812 1279 ntTSL 212.64□□□□□ -0.391e-8■■□□□ 13.2
YBX3P16989 PSMA3-203ENST00000553665 925 ntTSL 29.06□□□□□ -0.961e-8■■□□□ 13.2
YBX3P16989 PSMA3-209ENST00000555931 606 ntTSL 48.41□□□□□ -1.061e-8■■□□□ 13.2
YBX3P16989 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC8.25□□□□□ -1.091e-8■■□□□ 13.2
YBX3P16989 PSMA3-208ENST00000555743 640 ntTSL 28.12□□□□□ -1.111e-8■■□□□ 13.2
YBX3P16989 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.171e-8■■□□□ 13.2
YBX3P16989 PSMA3-211ENST00000557087 654 ntTSL 37.71□□□□□ -1.181e-8■■□□□ 13.2
YBX3P16989 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC7.24□□□□□ -1.251e-8■■□□□ 13.2
YBX3P16989 PSMA3-210ENST00000556321 500 ntTSL 26.51□□□□□ -1.371e-8■■□□□ 13.2
YBX3P16989 MZT2A-206ENST00000491265 2826 ntTSL 223.14■■□□□ 1.292e-21■■□□□ 13.2
YBX3P16989 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.251e-13■■□□□ 13.2
YBX3P16989 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.121e-13■■□□□ 13.2
YBX3P16989 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.561e-13■■□□□ 13.2
YBX3P16989 FTH1-207ENST00000532601 742 ntTSL 3 BASIC10.9□□□□□ -0.662e-63■■□□□ 13.2
YBX3P16989 HAUS4-207ENST00000553794 570 ntTSL 527.12■■□□□ 1.937e-7■■□□□ 13.2
YBX3P16989 HAUS4-215ENST00000554651 815 ntTSL 327.02■■□□□ 1.927e-7■■□□□ 13.2
YBX3P16989 HAUS4-216ENST00000555040 1107 ntTSL 223.02■■□□□ 1.287e-7■■□□□ 13.2
YBX3P16989 HAUS4-220ENST00000556915 578 ntTSL 317.44■□□□□ 0.387e-7■■□□□ 13.2
YBX3P16989 HAUS4-211ENST00000554373 896 ntTSL 516.34■□□□□ 0.217e-7■■□□□ 13.2
YBX3P16989 HAUS4-210ENST00000554349 750 ntTSL 313.04□□□□□ -0.327e-7■■□□□ 13.2
YBX3P16989 HAUS4-208ENST00000553859 602 ntTSL 310.79□□□□□ -0.687e-7■■□□□ 13.2
YBX3P16989 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.154e-6■■□□□ 13.2
YBX3P16989 FUCA2-202ENST00000367585 646 ntTSL 424.72■■□□□ 1.555e-6■■□□□ 13.2
YBX3P16989 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC17.43■□□□□ 0.381e-15■■□□□ 13.2
YBX3P16989 C12orf57-201ENST00000229281 560 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.011e-15■■□□□ 13.2
YBX3P16989 C12orf57-202ENST00000537087 662 ntTSL 2 BASIC15.12■□□□□ 0.011e-15■■□□□ 13.2
YBX3P16989 C12orf57-207ENST00000545581 556 ntTSL 312.61□□□□□ -0.391e-15■■□□□ 13.2
YBX3P16989 C12orf57-205ENST00000542222 640 ntTSL 212.2□□□□□ -0.461e-15■■□□□ 13.2
YBX3P16989 KRTCAP2-206ENST00000487350 785 ntTSL 1 (best)28.38■■■□□ 2.132e-20■■□□□ 13.2
YBX3P16989 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.212e-20■■□□□ 13.2
YBX3P16989 KRTCAP2-205ENST00000482246 414 ntTSL 321.41■■□□□ 1.022e-20■■□□□ 13.2
YBX3P16989 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.42e-20■■□□□ 13.2
YBX3P16989 KRTCAP2-204ENST00000471891 578 ntTSL 315.38■□□□□ 0.052e-20■■□□□ 13.2
YBX3P16989 KRTCAP2-210ENST00000497317 477 ntTSL 315.22■□□□□ 0.032e-20■■□□□ 13.2
YBX3P16989 KRTCAP2-209ENST00000492892 430 ntTSL 314.83□□□□□ -0.042e-20■■□□□ 13.2
YBX3P16989 KRTCAP2-208ENST00000491084 598 ntTSL 314.26□□□□□ -0.132e-20■■□□□ 13.2
YBX3P16989 KRTCAP2-207ENST00000490672 3264 ntTSL 212.1□□□□□ -0.472e-20■■□□□ 13.2
YBX3P16989 KRTCAP2-203ENST00000463527 463 ntTSL 36.14□□□□□ -1.432e-20■■□□□ 13.2
YBX3P16989 KRTCAP2-202ENST00000461136 271 ntTSL 36.14□□□□□ -1.432e-20■■□□□ 13.2
YBX3P16989 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.944e-7■■□□□ 13.2
YBX3P16989 PPP1R18-204ENST00000488324 1328 ntTSL 319.56■□□□□ 0.723e-7■■□□□ 13.2
YBX3P16989 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.553e-7■■□□□ 13.2
YBX3P16989 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.553e-7■■□□□ 13.2
Retrieved 100 of 29,075 protein–RNA pairs in 264.3 ms