Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FREM3P0C091 AL024508.2-201ENST00000607749 1894 ntBASIC16.63■□□□□ 0.25
FREM3P0C091 IER3-202ENST00000376377 1350 ntBASIC16.63■□□□□ 0.25
FREM3P0C091 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FREM3P0C091 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FREM3P0C091 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FREM3P0C091 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FREM3P0C091 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC16.63■□□□□ 0.25
FREM3P0C091 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FREM3P0C091 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FREM3P0C091 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FREM3P0C091 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
FREM3P0C091 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FREM3P0C091 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FREM3P0C091 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FREM3P0C091 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
FREM3P0C091 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
FREM3P0C091 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
FREM3P0C091 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.63■□□□□ 0.25
FREM3P0C091 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
FREM3P0C091 AP002383.4-201ENST00000442518 975 ntBASIC16.63■□□□□ 0.25
FREM3P0C091 BX276092.5-203ENST00000456199 560 ntBASIC16.63■□□□□ 0.25
FREM3P0C091 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC16.63■□□□□ 0.25
FREM3P0C091 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.63■□□□□ 0.25
FREM3P0C091 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.62■□□□□ 0.25
FREM3P0C091 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
FREM3P0C091 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
FREM3P0C091 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.62■□□□□ 0.25
FREM3P0C091 KRT89P-201ENST00000620027 1478 ntBASIC16.62■□□□□ 0.25
FREM3P0C091 ESPNP-201ENST00000270691 2015 ntBASIC16.62■□□□□ 0.25
FREM3P0C091 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
FREM3P0C091 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
FREM3P0C091 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
FREM3P0C091 AC090164.3-201ENST00000610780 2143 ntBASIC16.62■□□□□ 0.25
FREM3P0C091 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.62■□□□□ 0.25
FREM3P0C091 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FREM3P0C091 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
FREM3P0C091 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.62■□□□□ 0.25
FREM3P0C091 LINC00167-201ENST00000530583 1419 ntBASIC16.62■□□□□ 0.25
FREM3P0C091 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.62■□□□□ 0.25
FREM3P0C091 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FREM3P0C091 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
FREM3P0C091 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.62■□□□□ 0.25
FREM3P0C091 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.62■□□□□ 0.25
FREM3P0C091 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FREM3P0C091 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.62■□□□□ 0.25
FREM3P0C091 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
FREM3P0C091 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
FREM3P0C091 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.62■□□□□ 0.25
FREM3P0C091 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.61■□□□□ 0.25
FREM3P0C091 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.61■□□□□ 0.25
FREM3P0C091 TSPY22P-201ENST00000427496 604 ntBASIC16.61■□□□□ 0.25
FREM3P0C091 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.61■□□□□ 0.25
FREM3P0C091 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.61■□□□□ 0.25
FREM3P0C091 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
FREM3P0C091 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
FREM3P0C091 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
FREM3P0C091 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
FREM3P0C091 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FREM3P0C091 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.61■□□□□ 0.25
FREM3P0C091 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
FREM3P0C091 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FREM3P0C091 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
FREM3P0C091 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
FREM3P0C091 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
FREM3P0C091 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.61■□□□□ 0.25
FREM3P0C091 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.61■□□□□ 0.25
FREM3P0C091 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FREM3P0C091 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
FREM3P0C091 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FREM3P0C091 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.61■□□□□ 0.25
FREM3P0C091 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.61■□□□□ 0.25
FREM3P0C091 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.61■□□□□ 0.25
FREM3P0C091 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
FREM3P0C091 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.61■□□□□ 0.25
FREM3P0C091 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
FREM3P0C091 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FREM3P0C091 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FREM3P0C091 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.6■□□□□ 0.25
FREM3P0C091 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.6■□□□□ 0.25
FREM3P0C091 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FREM3P0C091 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FREM3P0C091 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.6■□□□□ 0.25
FREM3P0C091 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
FREM3P0C091 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
FREM3P0C091 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.6■□□□□ 0.25
FREM3P0C091 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.6■□□□□ 0.25
FREM3P0C091 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.6■□□□□ 0.25
FREM3P0C091 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FREM3P0C091 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
FREM3P0C091 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FREM3P0C091 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
FREM3P0C091 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FREM3P0C091 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
FREM3P0C091 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
FREM3P0C091 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.6■□□□□ 0.25
FREM3P0C091 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.6■□□□□ 0.25
FREM3P0C091 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
FREM3P0C091 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
FREM3P0C091 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms