Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 IFT80-227ENST00000498409 719 ntTSL 54.21□□□□□ -1.734e-7■■■■■ 133.7
SF3B1O75533 SMYD3-211ENST00000482592 514 ntTSL 34.19□□□□□ -1.744e-7■■■■■ 133.7
SF3B1O75533 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.13□□□□□ -1.754e-7■■■■■ 133.7
SF3B1O75533 VPS8-217ENST00000465213 656 ntTSL 54.06□□□□□ -1.764e-7■■■■■ 133.7
SF3B1O75533 USP46-205ENST00000504078 573 ntTSL 44.04□□□□□ -1.764e-7■■■■■ 133.7
SF3B1O75533 LMBR1-218ENST00000486837 576 ntTSL 24□□□□□ -1.774e-7■■■■■ 133.7
SF3B1O75533 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.95□□□□□ -1.784e-7■■■■■ 133.7
SF3B1O75533 ZCWPW2-204ENST00000428875 767 ntAPPRIS ALT2 TSL 53.9□□□□□ -1.794e-7■■■■■ 133.7
SF3B1O75533 IQUB-203ENST00000469057 2321 ntTSL 23.74□□□□□ -1.814e-7■■■■■ 133.7
SF3B1O75533 BSCL2-224ENST00000532115 328 ntTSL 33.73□□□□□ -1.814e-7■■■■■ 133.7
SF3B1O75533 RIC1-202ENST00000276898 3973 ntTSL 53.71□□□□□ -1.824e-7■■■■■ 133.7
SF3B1O75533 WDPCP-216ENST00000490935 847 ntTSL 53.7□□□□□ -1.824e-7■■■■■ 133.7
SF3B1O75533 AC079062.1-206ENST00000584671 550 ntTSL 33.69□□□□□ -1.824e-7■■■■■ 133.7
SF3B1O75533 UBE2D2-207ENST00000511691 543 ntTSL 23.53□□□□□ -1.844e-7■■■■■ 133.7
SF3B1O75533 TDP1-217ENST00000557782 318 ntTSL 53.53□□□□□ -1.844e-7■■■■■ 133.7
SF3B1O75533 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.854e-7■■■■■ 133.7
SF3B1O75533 CEBPZ-203ENST00000489306 611 ntTSL 23.38□□□□□ -1.874e-7■■■■■ 133.7
SF3B1O75533 IFT80-211ENST00000472773 657 ntTSL 53.3□□□□□ -1.884e-7■■■■■ 133.7
SF3B1O75533 TDP1-207ENST00000553617 876 ntTSL 53.29□□□□□ -1.884e-7■■■■■ 133.7
SF3B1O75533 QTRT2-210ENST00000482307 449 ntTSL 53.25□□□□□ -1.894e-7■■■■■ 133.7
SF3B1O75533 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.18□□□□□ -1.94e-7■■■■■ 133.7
SF3B1O75533 CHN2-217ENST00000461824 425 ntTSL 53.13□□□□□ -1.914e-7■■■■■ 133.7
SF3B1O75533 PTCH1-216ENST00000548379 548 ntTSL 43.1□□□□□ -1.914e-7■■■■■ 133.7
SF3B1O75533 HIBCH-209ENST00000416732 502 ntTSL 22.98□□□□□ -1.934e-7■■■■■ 133.7
SF3B1O75533 SMYD3-215ENST00000490322 368 ntTSL 32.87□□□□□ -1.954e-7■■■■■ 133.7
SF3B1O75533 BCCIP-204ENST00000463330 500 ntTSL 32.73□□□□□ -1.974e-7■■■■■ 133.7
SF3B1O75533 NGLY1-208ENST00000461491 552 ntTSL 42.54□□□□□ -24e-7■■■■■ 133.7
SF3B1O75533 ZNF876P-202ENST00000398732 1485 ntBASIC2.53□□□□□ -24e-7■■■■■ 133.7
SF3B1O75533 PTCH1-223ENST00000551623 366 ntTSL 1 (best)2.52□□□□□ -2.014e-7■■■■■ 133.7
SF3B1O75533 IFT80-222ENST00000486856 539 ntTSL 42.46□□□□□ -2.024e-7■■■■■ 133.7
SF3B1O75533 HIBCH-205ENST00000409820 511 ntTSL 32.35□□□□□ -2.034e-7■■■■■ 133.7
SF3B1O75533 WDPCP-212ENST00000467687 596 ntTSL 52.25□□□□□ -2.054e-7■■■■■ 133.7
SF3B1O75533 IFT80-208ENST00000468218 567 ntTSL 42.22□□□□□ -2.054e-7■■■■■ 133.7
SF3B1O75533 NGLY1-206ENST00000427041 579 ntTSL 42.15□□□□□ -2.074e-7■■■■■ 133.7
SF3B1O75533 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.14□□□□□ -2.074e-7■■■■■ 133.7
SF3B1O75533 AC135371.1-202ENST00000420403 425 ntTSL 31.68□□□□□ -2.144e-7■■■■■ 133.7
SF3B1O75533 RPL14-205ENST00000461368 170 ntTSL 21.39□□□□□ -2.194e-7■■■■■ 133.7
SF3B1O75533 MSL2-204ENST00000481989 576 ntTSL 41.28□□□□□ -2.24e-7■■■■■ 133.7
SF3B1O75533 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.21□□□□□ -2.224e-7■■■■■ 133.7
SF3B1O75533 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.17□□□□□ -2.221e-15■■■■■ 133.7
SF3B1O75533 MBD5-219ENST00000636948 100 ntTSL 50.14□□□□□ -2.394e-7■■■■■ 133.7
SF3B1O75533 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.62e-6■■■■■ 133.6
SF3B1O75533 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.522e-6■■■■■ 133.6
SF3B1O75533 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.152e-6■■■■■ 133.6
SF3B1O75533 PTOV1-209ENST00000597793 1716 ntTSL 1 (best)20.71■□□□□ 0.912e-6■■■■■ 133.6
SF3B1O75533 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC17.21■□□□□ 0.352e-6■■■■■ 133.6
SF3B1O75533 PTOV1-210ENST00000598325 1438 ntTSL 516.49■□□□□ 0.232e-6■■■■■ 133.6
SF3B1O75533 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.89■□□□□ 0.132e-6■■■■■ 133.6
SF3B1O75533 PTOV1-218ENST00000601612 1480 ntTSL 214.58□□□□□ -0.082e-6■■■■■ 133.6
SF3B1O75533 PTOV1-216ENST00000601093 522 ntTSL 212.67□□□□□ -0.382e-6■■■■■ 133.6
SF3B1O75533 APBB3-213ENST00000506958 987 ntTSL 323.45■■□□□ 1.342e-6■■■■■ 133.5
SF3B1O75533 APBB3-207ENST00000503850 690 ntTSL 1 (best)22.65■■□□□ 1.222e-6■■■■■ 133.5
SF3B1O75533 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.992e-6■■■■■ 133.5
SF3B1O75533 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.37■□□□□ 0.852e-6■■■■■ 133.5
SF3B1O75533 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.98■□□□□ 0.792e-6■■■■■ 133.5
SF3B1O75533 APBB3-212ENST00000506289 943 ntTSL 519.18■□□□□ 0.662e-6■■■■■ 133.5
SF3B1O75533 BRD9-205ENST00000483234 2211 ntTSL 218.71■□□□□ 0.592e-6■■■■■ 133.5
SF3B1O75533 BRD9-212ENST00000495265 2843 ntTSL 218.34■□□□□ 0.532e-6■■■■■ 133.5
SF3B1O75533 APBB3-220ENST00000513507 723 ntTSL 317.1■□□□□ 0.332e-6■■■■■ 133.5
SF3B1O75533 APBB3-210ENST00000505617 573 ntTSL 416.74■□□□□ 0.272e-6■■■■■ 133.5
SF3B1O75533 BRD9-208ENST00000489816 3170 ntTSL 1 (best)15.9■□□□□ 0.142e-6■■■■■ 133.5
SF3B1O75533 BRD9-217ENST00000519112 861 ntTSL 315.29■□□□□ 0.042e-6■■■■■ 133.5
SF3B1O75533 BRD9-213ENST00000495794 4865 ntTSL 214.1□□□□□ -0.152e-6■■■■■ 133.5
SF3B1O75533 BRD9-204ENST00000483173 2120 ntTSL 2 BASIC13.29□□□□□ -0.282e-6■■■■■ 133.5
SF3B1O75533 APBB3-217ENST00000511459 547 ntTSL 412.53□□□□□ -0.42e-6■■■■■ 133.5
SF3B1O75533 BRD9-209ENST00000490814 3477 ntTSL 1 (best)10.32□□□□□ -0.762e-6■■■■■ 133.5
SF3B1O75533 TRANK1-201ENST00000429976 10481 ntAPPRIS P1 TSL 5 BASIC10.02□□□□□ -0.812e-6■■■■■ 133.5
SF3B1O75533 ENTPD1-AS1-209ENST00000452728 858 ntTSL 3 BASIC11.3□□□□□ -0.64e-6■■■■■ 133.4
SF3B1O75533 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC6.57□□□□□ -1.364e-6■■■■■ 133.4
SF3B1O75533 ENTPD1-AS1-208ENST00000451364 716 ntTSL 26.43□□□□□ -1.384e-6■■■■■ 133.4
SF3B1O75533 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC14.33□□□□□ -0.122e-6■■■■■ 133.4
SF3B1O75533 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC13.93□□□□□ -0.182e-6■■■■■ 133.4
SF3B1O75533 SLC26A6-201ENST00000307364 2586 ntTSL 1 (best)13.48□□□□□ -0.252e-6■■■■■ 133.4
SF3B1O75533 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.252e-6■■■■■ 133.4
SF3B1O75533 SLC26A6-204ENST00000383733 2545 ntTSL 1 (best) BASIC13.16□□□□□ -0.32e-6■■■■■ 133.4
SF3B1O75533 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.322e-6■■■■■ 133.4
SF3B1O75533 ZCCHC14-204ENST00000568020 6242 ntTSL 1 (best)13.02□□□□□ -0.323e-6■■■■■ 133.3
SF3B1O75533 ZCCHC14-201ENST00000268616 7102 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.363e-6■■■■■ 133.3
SF3B1O75533 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.18■□□□□ 0.182e-7■■■■■ 133.2
SF3B1O75533 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.65■□□□□ 0.12e-7■■■■■ 133.2
SF3B1O75533 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC15.12■□□□□ 0.012e-7■■■■■ 133.2
SF3B1O75533 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.012e-7■■■■■ 133.2
SF3B1O75533 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC14.84□□□□□ -0.032e-7■■■■■ 133.2
SF3B1O75533 IMPDH1-211ENST00000484496 2422 ntTSL 513.88□□□□□ -0.192e-7■■■■■ 133.2
SF3B1O75533 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC14.66□□□□□ -0.063e-6■■■■■ 133.2
SF3B1O75533 AF241726.2-201ENST00000465127 954 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.672e-6■■■■■ 133.1
SF3B1O75533 SKAP2-201ENST00000345317 3998 ntAPPRIS P1 TSL 1 (best) BASIC8.89□□□□□ -0.995e-6■■■■■ 133.1
SF3B1O75533 SKAP2-206ENST00000489977 679 ntTSL 52.12□□□□□ -2.075e-6■■■■■ 133.1
SF3B1O75533 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.283e-7■■■■■ 133
SF3B1O75533 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.864e-6■■■■■ 133
SF3B1O75533 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.342e-6■■■■■ 133
SF3B1O75533 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.44■■□□□ 1.344e-6■■■■■ 133
SF3B1O75533 SIPA1L3-202ENST00000476317 608 ntTSL 320.71■□□□□ 0.915e-8■■■■■ 133
SF3B1O75533 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.864e-6■■■■■ 133
SF3B1O75533 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.445e-6■■■■■ 133
SF3B1O75533 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.365e-6■■■■■ 133
SF3B1O75533 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.215e-6■■■■■ 133
SF3B1O75533 NLRP1-202ENST00000269280 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.352e-6■■■■■ 132.9
SF3B1O75533 NLRP1-208ENST00000571451 5444 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.52e-6■■■■■ 132.9
SF3B1O75533 NLRP1-216ENST00000617618 4788 ntAPPRIS P4 TSL 5 BASIC10.06□□□□□ -0.82e-6■■■■■ 132.9
Retrieved 100 of 46,956 protein–RNA pairs in 1488.7 ms