RNA–Protein interactions for RNA: ENST00000548379.5

PTCH1-216, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 548 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-216ENST00000548379 AEBP2Q6ZN18 517 aaPredicted RBP18.86■□□□□ 0.61
PTCH1-216ENST00000548379 CHIC1Q5VXU3 224 aa18.74■□□□□ 0.59
PTCH1-216ENST00000548379 PHF23Q9BUL5 403 aaPredicted RBP16.54■□□□□ 0.24
PTCH1-216ENST00000548379 SENP3Q9H4L4 574 aaPredicted RBP15.89■□□□□ 0.13
PTCH1-216ENST00000548379 PLPPR3Q6T4P5 718 aa15.34■□□□□ 0.05
PTCH1-216ENST00000548379 FOXD1Q16676 465 aa14.74□□□□□ -0.05
PTCH1-216ENST00000548379 PPP6R1Q9UPN7 881 aa14.46□□□□□ -0.09
PTCH1-216ENST00000548379 ADRA2BP18089 450 aa14.43□□□□□ -0.1
PTCH1-216ENST00000548379 PIAS4Q8N2W9 510 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-216ENST00000548379 KCNA4P22459 653 aa13.64□□□□□ -0.23
PTCH1-216ENST00000548379 PPP4R3CPQ6ZMV5 832 aa13.56□□□□□ -0.24
PTCH1-216ENST00000548379 MSH5O43196 834 aa13.42□□□□□ -0.26
PTCH1-216ENST00000548379 POTEDQ86YR6 584 aa13.31□□□□□ -0.28
PTCH1-216ENST00000548379 NCBP3Q53F19 620 aaKnown RBP13.27□□□□□ -0.29
PTCH1-216ENST00000548379 SCAF1Q9H7N4 1312 aaKnown RBP13.17□□□□□ -0.3
PTCH1-216ENST00000548379 NPM3O75607 178 aaKnown RBP13.12□□□□□ -0.31
PTCH1-216ENST00000548379 CNKSR2Q8WXI2 1034 aa13.11□□□□□ -0.31
PTCH1-216ENST00000548379 SLC4A1APQ9BWU0 796 aaKnown RBP13.02□□□□□ -0.33
PTCH1-216ENST00000548379 MAPK8IP2Q13387 824 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-216ENST00000548379 EHMT2Q96KQ7 1210 aa12.99□□□□□ -0.33
PTCH1-216ENST00000548379 DNAJC5BQ9UF47 199 aa12.83□□□□□ -0.36
PTCH1-216ENST00000548379 CSRNP3Q8WYN3 585 aa12.79□□□□□ -0.36
PTCH1-216ENST00000548379 RNF216Q9NWF9 866 aaPredicted RBP12.79□□□□□ -0.36
PTCH1-216ENST00000548379 DMRT2Q9Y5R5 561 aa12.77□□□□□ -0.37
PTCH1-216ENST00000548379 HOXD11P31277 338 aaPredicted RBP12.68□□□□□ -0.38
PTCH1-216ENST00000548379 ZBTB22O15209 634 aa12.59□□□□□ -0.39
PTCH1-216ENST00000548379 FOXD4L1Q9NU39 408 aa12.45□□□□□ -0.42
PTCH1-216ENST00000548379 SLC4A2P04920 1241 aa12.34□□□□□ -0.43
PTCH1-216ENST00000548379 MYCNP04198 464 aaPredicted RBP12.1□□□□□ -0.47
PTCH1-216ENST00000548379 DCAF8L1A6NGE4 600 aa12.04□□□□□ -0.48
PTCH1-216ENST00000548379 ATXN8OSP0DMR3 200 aa12.02□□□□□ -0.49
PTCH1-216ENST00000548379 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.95□□□□□ -0.5
PTCH1-216ENST00000548379 U3KPZ7 1027 aaPredicted RBP11.89□□□□□ -0.51
PTCH1-216ENST00000548379 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.81□□□□□ -0.52
PTCH1-216ENST00000548379 HNRNPUL2Q1KMD3 747 aaKnown RBP11.81□□□□□ -0.52
PTCH1-216ENST00000548379 SAMD1Q6SPF0 538 aaPredicted RBP11.79□□□□□ -0.52
PTCH1-216ENST00000548379 ATF5Q9Y2D1 282 aaPredicted RBP11.77□□□□□ -0.53
PTCH1-216ENST00000548379 APLP2Q06481 763 aa11.59□□□□□ -0.55
PTCH1-216ENST00000548379 RNF39Q9H2S5 420 aa11.57□□□□□ -0.56
PTCH1-216ENST00000548379 ZNF219Q9P2Y4 722 aaPredicted RBP11.52□□□□□ -0.57
PTCH1-216ENST00000548379 FKBP8Q14318 412 aa11.47□□□□□ -0.57
PTCH1-216ENST00000548379 C1QBPQ07021 282 aaKnown RBP11.43□□□□□ -0.58
PTCH1-216ENST00000548379 SPINK5Q9NQ38 1064 aaPredicted RBP11.42□□□□□ -0.58
PTCH1-216ENST00000548379 TRHP20396 242 aaPredicted RBP11.33□□□□□ -0.6
PTCH1-216ENST00000548379 CAPN15O75808 1086 aa11.3□□□□□ -0.6
PTCH1-216ENST00000548379 MKRN4PQ13434 485 aaPredicted RBP11.3□□□□□ -0.6
PTCH1-216ENST00000548379 POLA2Q14181 598 aa11.27□□□□□ -0.61
PTCH1-216ENST00000548379 FBLN2P98095 1184 aa11.18□□□□□ -0.62
PTCH1-216ENST00000548379 SPDYE4A6NLX3 237 aa11.15□□□□□ -0.62
PTCH1-216ENST00000548379 CACNB1Q02641 598 aaPredicted RBP11.15□□□□□ -0.62
PTCH1-216ENST00000548379 PROM2Q8N271 834 aa11.13□□□□□ -0.63
PTCH1-216ENST00000548379 ABCB7O75027 752 aa11.12□□□□□ -0.63
PTCH1-216ENST00000548379 DSG3P32926 999 aa11.12□□□□□ -0.63
PTCH1-216ENST00000548379 ZBTB12Q9Y330 459 aaPredicted RBP11.11□□□□□ -0.63
PTCH1-216ENST00000548379 AMER1Q5JTC6 1135 aaPredicted RBP11.08□□□□□ -0.64
PTCH1-216ENST00000548379 RTN4Q9NQC3 1192 aaKnown RBP11.07□□□□□ -0.64
PTCH1-216ENST00000548379 FBXO3Q9UK99 471 aa10.98□□□□□ -0.65
PTCH1-216ENST00000548379 SPDYE2BA6NHP3 402 aa10.87□□□□□ -0.67
PTCH1-216ENST00000548379 SPDYE6P0CI01 402 aa10.87□□□□□ -0.67
PTCH1-216ENST00000548379 SPDYE2Q495Y8 402 aa10.87□□□□□ -0.67
PTCH1-216ENST00000548379 OSCARQ8IYS5 282 aa10.87□□□□□ -0.67
PTCH1-216ENST00000548379 SSUH2Q9Y2M2 353 aa10.86□□□□□ -0.67
PTCH1-216ENST00000548379 VASPP50552 380 aaPredicted RBP10.84□□□□□ -0.67
PTCH1-216ENST00000548379 ZNF692Q9BU19 519 aaPredicted RBP10.82□□□□□ -0.68
PTCH1-216ENST00000548379 IFNLR1Q8IU57 520 aaPredicted RBP10.74□□□□□ -0.69
PTCH1-216ENST00000548379 PABPN1Q86U42 306 aaKnown RBP eCLIP10.71□□□□□ -0.69
PTCH1-216ENST00000548379 STAG3Q9UJ98 1225 aa10.68□□□□□ -0.7
PTCH1-216ENST00000548379 RBM42Q9BTD8 480 aaKnown RBP10.55□□□□□ -0.72
PTCH1-216ENST00000548379 SLC24A1O60721 1099 aa10.54□□□□□ -0.72
PTCH1-216ENST00000548379 PKD2Q13563 968 aa10.53□□□□□ -0.72
PTCH1-216ENST00000548379 SPOCK2Q92563 424 aa10.52□□□□□ -0.73
PTCH1-216ENST00000548379 AKT1S1Q96B36 256 aa10.51□□□□□ -0.73
PTCH1-216ENST00000548379 PLCD3Q8N3E9 789 aa10.5□□□□□ -0.73
PTCH1-216ENST00000548379 MIER1Q8N108 512 aa10.49□□□□□ -0.73
PTCH1-216ENST00000548379 KLHL34Q8N239 644 aa10.48□□□□□ -0.73
PTCH1-216ENST00000548379 SPDYE1Q8NFV5 336 aaPredicted RBP10.43□□□□□ -0.74
PTCH1-216ENST00000548379 REM2Q8IYK8 340 aaPredicted RBP10.41□□□□□ -0.74
PTCH1-216ENST00000548379 ZBTB47Q9UFB7 747 aaPredicted RBP10.4□□□□□ -0.74
PTCH1-216ENST00000548379 PLEKHG5O94827 1062 aa10.37□□□□□ -0.75
PTCH1-216ENST00000548379 ECM2O94769 699 aaPredicted RBP10.32□□□□□ -0.76
PTCH1-216ENST00000548379 CREBZFQ9NS37 354 aa10.32□□□□□ -0.76
PTCH1-216ENST00000548379 POTEHQ6S545 545 aa10.31□□□□□ -0.76
PTCH1-216ENST00000548379 PRR29P0C7W0 189 aa10.3□□□□□ -0.76
PTCH1-216ENST00000548379 MNX1P50219 401 aaPredicted RBP10.3□□□□□ -0.76
PTCH1-216ENST00000548379 CLEC11AQ9Y240 323 aa10.3□□□□□ -0.76
PTCH1-216ENST00000548379 PITPNM1O00562 1244 aa10.28□□□□□ -0.76
PTCH1-216ENST00000548379 NUBP1P53384 320 aa10.28□□□□□ -0.76
PTCH1-216ENST00000548379 RGL2O15211 777 aa10.26□□□□□ -0.77
PTCH1-216ENST00000548379 PLCB2Q00722 1185 aa10.25□□□□□ -0.77
PTCH1-216ENST00000548379 DCAF8L2P0C7V8 631 aa10.24□□□□□ -0.77
PTCH1-216ENST00000548379 TRIM41Q8WV44 630 aa10.24□□□□□ -0.77
PTCH1-216ENST00000548379 CIZ1Q9ULV3 898 aaPredicted RBP10.24□□□□□ -0.77
PTCH1-216ENST00000548379 GSE1Q14687 1217 aa10.21□□□□□ -0.77
PTCH1-216ENST00000548379 NPM1P06748 294 aaKnown RBP eCLIP10.2□□□□□ -0.78
PTCH1-216ENST00000548379 BBXQ8WY36 941 aaPredicted RBP10.16□□□□□ -0.78
PTCH1-216ENST00000548379 RNF25Q96BH1 459 aaPredicted RBP10.14□□□□□ -0.79
PTCH1-216ENST00000548379 RASEFQ8IZ41 740 aa10.13□□□□□ -0.79
PTCH1-216ENST00000548379 DCAF8Q5TAQ9 597 aa10.12□□□□□ -0.79
PTCH1-216ENST00000548379 FAM212AQ96EL1 285 aa10.12□□□□□ -0.79
PTCH1-216ENST00000548379 CHRM1P11229 460 aaPredicted RBP10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms