RNA–Protein interactions for RNA: ENST00000557782.1

TDP1-217, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 318 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-217ENST00000557782 CHIC1Q5VXU3 224 aa12.15□□□□□ -0.46
TDP1-217ENST00000557782 AEBP2Q6ZN18 517 aaPredicted RBP11.74□□□□□ -0.53
TDP1-217ENST00000557782 PHF23Q9BUL5 403 aaPredicted RBP10.7□□□□□ -0.7
TDP1-217ENST00000557782 PLPPR3Q6T4P5 718 aa10.19□□□□□ -0.78
TDP1-217ENST00000557782 SENP3Q9H4L4 574 aaPredicted RBP9.94□□□□□ -0.82
TDP1-217ENST00000557782 EHMT2Q96KQ7 1210 aa9.7□□□□□ -0.86
TDP1-217ENST00000557782 KCNA4P22459 653 aa9.53□□□□□ -0.88
TDP1-217ENST00000557782 ADRA2BP18089 450 aa9.43□□□□□ -0.9
TDP1-217ENST00000557782 CSRNP3Q8WYN3 585 aa9.25□□□□□ -0.93
TDP1-217ENST00000557782 SLC4A1APQ9BWU0 796 aaKnown RBP9.23□□□□□ -0.93
TDP1-217ENST00000557782 PPP6R1Q9UPN7 881 aa9.22□□□□□ -0.93
TDP1-217ENST00000557782 FOXD1Q16676 465 aa9.1□□□□□ -0.95
TDP1-217ENST00000557782 NCBP3Q53F19 620 aaKnown RBP9.04□□□□□ -0.96
TDP1-217ENST00000557782 PPP4R3CPQ6ZMV5 832 aa9.04□□□□□ -0.96
TDP1-217ENST00000557782 SLC24A1O60721 1099 aa8.98□□□□□ -0.97
TDP1-217ENST00000557782 NPM3O75607 178 aaKnown RBP8.84□□□□□ -0.99
TDP1-217ENST00000557782 AMER1Q5JTC6 1135 aaPredicted RBP8.79□□□□□ -1
TDP1-217ENST00000557782 PIAS4Q8N2W9 510 aaPredicted RBP8.78□□□□□ -1
TDP1-217ENST00000557782 ZBTB22O15209 634 aa8.74□□□□□ -1.01
TDP1-217ENST00000557782 RTN4Q9NQC3 1192 aaKnown RBP8.72□□□□□ -1.01
TDP1-217ENST00000557782 CNKSR2Q8WXI2 1034 aa8.66□□□□□ -1.02
TDP1-217ENST00000557782 FOXD4L1Q9NU39 408 aa8.63□□□□□ -1.03
TDP1-217ENST00000557782 SCAF1Q9H7N4 1312 aaKnown RBP8.58□□□□□ -1.04
TDP1-217ENST00000557782 DNAJC5BQ9UF47 199 aa8.49□□□□□ -1.05
TDP1-217ENST00000557782 FKBP8Q14318 412 aa8.37□□□□□ -1.07
TDP1-217ENST00000557782 RNF216Q9NWF9 866 aaPredicted RBP8.32□□□□□ -1.08
TDP1-217ENST00000557782 ATXN8OSP0DMR3 200 aa8.28□□□□□ -1.08
TDP1-217ENST00000557782 MAPK8IP2Q13387 824 aaPredicted RBP8.21□□□□□ -1.1
TDP1-217ENST00000557782 MSH5O43196 834 aa8.2□□□□□ -1.1
TDP1-217ENST00000557782 MYCNP04198 464 aaPredicted RBP8.2□□□□□ -1.1
TDP1-217ENST00000557782 SLC4A2P04920 1241 aa8.16□□□□□ -1.1
TDP1-217ENST00000557782 HOXD11P31277 338 aaPredicted RBP8.1□□□□□ -1.11
TDP1-217ENST00000557782 PLCB2Q00722 1185 aa8.04□□□□□ -1.12
TDP1-217ENST00000557782 DMRT2Q9Y5R5 561 aa8.01□□□□□ -1.13
TDP1-217ENST00000557782 BCANQ96GW7 911 aa7.97□□□□□ -1.13
TDP1-217ENST00000557782 HAP1P54257 671 aaPredicted RBP7.96□□□□□ -1.14
TDP1-217ENST00000557782 FBXO3Q9UK99 471 aa7.93□□□□□ -1.14
TDP1-217ENST00000557782 DCAF8L2P0C7V8 631 aa7.87□□□□□ -1.15
TDP1-217ENST00000557782 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.86□□□□□ -1.15
TDP1-217ENST00000557782 HNRNPUL2Q1KMD3 747 aaKnown RBP7.86□□□□□ -1.15
TDP1-217ENST00000557782 VSIG10Q8N0Z9 540 aa7.85□□□□□ -1.15
TDP1-217ENST00000557782 TAOK2Q9UL54 1235 aa7.85□□□□□ -1.15
TDP1-217ENST00000557782 ATF5Q9Y2D1 282 aaPredicted RBP7.85□□□□□ -1.15
TDP1-217ENST00000557782 PRKCSHP14314 528 aaPredicted RBP7.84□□□□□ -1.15
TDP1-217ENST00000557782 SAMD1Q6SPF0 538 aaPredicted RBP7.84□□□□□ -1.15
TDP1-217ENST00000557782 VASPP50552 380 aaPredicted RBP7.77□□□□□ -1.17
TDP1-217ENST00000557782 SPDYE4A6NLX3 237 aa7.75□□□□□ -1.17
TDP1-217ENST00000557782 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.75□□□□□ -1.17
TDP1-217ENST00000557782 TPRNQ4KMQ1 711 aa7.73□□□□□ -1.17
TDP1-217ENST00000557782 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.71□□□□□ -1.18
TDP1-217ENST00000557782 ZNF219Q9P2Y4 722 aaPredicted RBP7.69□□□□□ -1.18
TDP1-217ENST00000557782 IFNLR1Q8IU57 520 aaPredicted RBP7.68□□□□□ -1.18
TDP1-217ENST00000557782 DCAF8L1A6NGE4 600 aa7.67□□□□□ -1.18
TDP1-217ENST00000557782 PROM2Q8N271 834 aa7.67□□□□□ -1.18
TDP1-217ENST00000557782 APLP2Q06481 763 aa7.66□□□□□ -1.18
TDP1-217ENST00000557782 PKD2Q13563 968 aa7.66□□□□□ -1.18
TDP1-217ENST00000557782 BBXQ8WY36 941 aaPredicted RBP7.66□□□□□ -1.18
TDP1-217ENST00000557782 U3KPZ7 1027 aaPredicted RBP7.66□□□□□ -1.18
TDP1-217ENST00000557782 PAXIP1Q6ZW49 1069 aaPredicted RBP7.62□□□□□ -1.19
TDP1-217ENST00000557782 KDM2AQ9Y2K7 1162 aa7.62□□□□□ -1.19
TDP1-217ENST00000557782 CFAP44Q96MT7 982 aa7.6□□□□□ -1.19
TDP1-217ENST00000557782 FBLN2P98095 1184 aa7.58□□□□□ -1.2
TDP1-217ENST00000557782 ECM2O94769 699 aaPredicted RBP7.56□□□□□ -1.2
TDP1-217ENST00000557782 MKRN4PQ13434 485 aaPredicted RBP7.55□□□□□ -1.2
TDP1-217ENST00000557782 SPRYD3Q8NCJ5 442 aa7.53□□□□□ -1.2
TDP1-217ENST00000557782 KLHL34Q8N239 644 aa7.52□□□□□ -1.21
TDP1-217ENST00000557782 SPOCK2Q92563 424 aa7.52□□□□□ -1.21
TDP1-217ENST00000557782 NPM1P06748 294 aaKnown RBP eCLIP7.5□□□□□ -1.21
TDP1-217ENST00000557782 NBR1Q14596 966 aa7.5□□□□□ -1.21
TDP1-217ENST00000557782 ERICH6Q7L0X2 663 aa7.48□□□□□ -1.21
TDP1-217ENST00000557782 TSHZ2Q9NRE2 1034 aa7.46□□□□□ -1.22
TDP1-217ENST00000557782 TIMELESSQ9UNS1 1208 aa7.46□□□□□ -1.22
TDP1-217ENST00000557782 TULP1O00294 542 aaPredicted RBP7.44□□□□□ -1.22
TDP1-217ENST00000557782 ARXQ96QS3 562 aa7.43□□□□□ -1.22
TDP1-217ENST00000557782 RGL2O15211 777 aa7.42□□□□□ -1.22
TDP1-217ENST00000557782 DAXXQ9UER7 740 aaPredicted RBP7.42□□□□□ -1.22
TDP1-217ENST00000557782 GTF3C3Q9Y5Q9 886 aa7.42□□□□□ -1.22
TDP1-217ENST00000557782 CHGAP10645 457 aaKnown RBP7.38□□□□□ -1.23
TDP1-217ENST00000557782 DNAJC5Q9H3Z4 198 aa7.38□□□□□ -1.23
TDP1-217ENST00000557782 STAG3Q9UJ98 1225 aa7.38□□□□□ -1.23
TDP1-217ENST00000557782 PLCD3Q8N3E9 789 aa7.37□□□□□ -1.23
TDP1-217ENST00000557782 TRHP20396 242 aaPredicted RBP7.35□□□□□ -1.23
TDP1-217ENST00000557782 POLA2Q14181 598 aa7.35□□□□□ -1.23
TDP1-217ENST00000557782 ZBTB12Q9Y330 459 aaPredicted RBP7.35□□□□□ -1.23
TDP1-217ENST00000557782 TMEM132AQ24JP5 1023 aa7.3□□□□□ -1.24
TDP1-217ENST00000557782 TRIM41Q8WV44 630 aa7.3□□□□□ -1.24
TDP1-217ENST00000557782 CIZ1Q9ULV3 898 aaPredicted RBP7.3□□□□□ -1.24
TDP1-217ENST00000557782 HOMEZQ8IX15 550 aa7.28□□□□□ -1.24
TDP1-217ENST00000557782 HS6ST3Q8IZP7 471 aa7.28□□□□□ -1.24
TDP1-217ENST00000557782 MIER1Q8N108 512 aa7.28□□□□□ -1.24
TDP1-217ENST00000557782 PLEKHG5O94827 1062 aa7.27□□□□□ -1.25
TDP1-217ENST00000557782 ZBTB47Q9UFB7 747 aaPredicted RBP7.27□□□□□ -1.25
TDP1-217ENST00000557782 SPINK5Q9NQ38 1064 aaPredicted RBP7.25□□□□□ -1.25
TDP1-217ENST00000557782 CAPN15O75808 1086 aa7.24□□□□□ -1.25
TDP1-217ENST00000557782 C14orf37Q86TY3 774 aa7.24□□□□□ -1.25
TDP1-217ENST00000557782 ZNF692Q9BU19 519 aaPredicted RBP7.24□□□□□ -1.25
TDP1-217ENST00000557782 SPDYE2BA6NHP3 402 aa7.17□□□□□ -1.26
TDP1-217ENST00000557782 SPDYE6P0CI01 402 aa7.17□□□□□ -1.26
TDP1-217ENST00000557782 SPDYE2Q495Y8 402 aa7.17□□□□□ -1.26
TDP1-217ENST00000557782 SSUH2Q9Y2M2 353 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms