RNA–Protein interactions for RNA: ENST00000345317.6

SKAP2-201, Transcript of src kinase associated phosphoprotein 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKAP2, Length 3,998 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKAP2-201ENST00000345317 NISCHQ9Y2I1 1504 aa17.27■□□□□ 0.36
SKAP2-201ENST00000345317 DCAF8L2P0C7V8 631 aa16.06■□□□□ 0.16
SKAP2-201ENST00000345317 SHROOM4Q9ULL8 1493 aa15.57■□□□□ 0.08
SKAP2-201ENST00000345317 SUPT5HO00267 1087 aaKnown RBP15.32■□□□□ 0.04
SKAP2-201ENST00000345317 ABCC9O60706 1549 aa14.65□□□□□ -0.06
SKAP2-201ENST00000345317 EHMT2Q96KQ7 1210 aa14.55□□□□□ -0.08
SKAP2-201ENST00000345317 ZCCHC6Q5VYS8 1495 aaKnown RBP14.4□□□□□ -0.1
SKAP2-201ENST00000345317 CCDC180Q9P1Z9 1646 aa14.4□□□□□ -0.1
SKAP2-201ENST00000345317 FAM9AQ8IZU1 332 aaPredicted RBP14.34□□□□□ -0.11
SKAP2-201ENST00000345317 PABPN1Q86U42 306 aaKnown RBP eCLIP14.28□□□□□ -0.12
SKAP2-201ENST00000345317 SCRIBQ14160 1630 aa14.12□□□□□ -0.15
SKAP2-201ENST00000345317 TRIM41Q8WV44 630 aa14.12□□□□□ -0.15
SKAP2-201ENST00000345317 CHIC1Q5VXU3 224 aa14.11□□□□□ -0.15
SKAP2-201ENST00000345317 LOC105371045A0A1W2PR82 267 aa14□□□□□ -0.17
SKAP2-201ENST00000345317 TTBK1Q5TCY1 1321 aaPredicted RBP13.93□□□□□ -0.18
SKAP2-201ENST00000345317 RANGAP1P46060 587 aaPredicted RBP13.91□□□□□ -0.18
SKAP2-201ENST00000345317 PCGF6Q9BYE7 350 aa13.87□□□□□ -0.19
SKAP2-201ENST00000345317 PPARGC1BQ86YN6 1023 aaKnown RBP13.81□□□□□ -0.2
SKAP2-201ENST00000345317 DCAF1Q9Y4B6 1507 aa13.76□□□□□ -0.21
SKAP2-201ENST00000345317 RB1CC1Q8TDY2 1594 aa13.72□□□□□ -0.21
SKAP2-201ENST00000345317 UBTFP17480 764 aaKnown RBP13.72□□□□□ -0.21
SKAP2-201ENST00000345317 NACADO15069 1562 aa13.72□□□□□ -0.21
SKAP2-201ENST00000345317 CECR2Q9BXF3 1484 aa13.71□□□□□ -0.21
SKAP2-201ENST00000345317 RSF1Q96T23 1441 aaPredicted RBP13.71□□□□□ -0.22
SKAP2-201ENST00000345317 MYO15BQ96JP2 1530 aa13.56□□□□□ -0.24
SKAP2-201ENST00000345317 APLP2Q06481 763 aa13.52□□□□□ -0.24
SKAP2-201ENST00000345317 PELP1Q8IZL8 1130 aaKnown RBP13.51□□□□□ -0.25
SKAP2-201ENST00000345317 MROH2BQ7Z745 1585 aa13.5□□□□□ -0.25
SKAP2-201ENST00000345317 ATP1B4Q9UN42 357 aaPredicted RBP13.48□□□□□ -0.25
SKAP2-201ENST00000345317 TRIM26Q12899 539 aaPredicted RBP13.36□□□□□ -0.27
SKAP2-201ENST00000345317 BAZ1AQ9NRL2 1556 aaPredicted RBP13.35□□□□□ -0.27
SKAP2-201ENST00000345317 WIZO95785 1651 aa13.35□□□□□ -0.27
SKAP2-201ENST00000345317 CSRNP3Q8WYN3 585 aa13.3□□□□□ -0.28
SKAP2-201ENST00000345317 CCER1Q8TC90 406 aaPredicted RBP13.28□□□□□ -0.28
SKAP2-201ENST00000345317 BAZ1BQ9UIG0 1483 aaKnown RBP13.26□□□□□ -0.29
SKAP2-201ENST00000345317 HRCP23327 699 aa13.24□□□□□ -0.29
SKAP2-201ENST00000345317 CCDC88BA6NC98 1476 aa13.23□□□□□ -0.29
SKAP2-201ENST00000345317 ITGAEP38570 1179 aa13.22□□□□□ -0.29
SKAP2-201ENST00000345317 HNRNPUL2Q1KMD3 747 aaKnown RBP13.22□□□□□ -0.29
SKAP2-201ENST00000345317 ABCC8Q09428 1581 aa13.18□□□□□ -0.3
SKAP2-201ENST00000345317 P3H3Q8IVL6 736 aa13.17□□□□□ -0.3
SKAP2-201ENST00000345317 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.17□□□□□ -0.3
SKAP2-201ENST00000345317 MYT1Q01538 1121 aa13.15□□□□□ -0.3
SKAP2-201ENST00000345317 SMARCA4P51532 1647 aa13.13□□□□□ -0.31
SKAP2-201ENST00000345317 WRNQ14191 1432 aaPredicted RBP eCLIP13.12□□□□□ -0.31
SKAP2-201ENST00000345317 SOGA1O94964 1423 aa13.11□□□□□ -0.31
SKAP2-201ENST00000345317 ATAD2BQ9ULI0 1458 aa13.08□□□□□ -0.32
SKAP2-201ENST00000345317 FBLN2P98095 1184 aa13.07□□□□□ -0.32
SKAP2-201ENST00000345317 TOP2AP11388 1531 aaKnown RBP13.07□□□□□ -0.32
SKAP2-201ENST00000345317 ARID3CA6NKF2 412 aa13.05□□□□□ -0.32
SKAP2-201ENST00000345317 BICRAQ9NZM4 1560 aa12.99□□□□□ -0.33
SKAP2-201ENST00000345317 ZEB1P37275 1124 aaPredicted RBP12.99□□□□□ -0.33
SKAP2-201ENST00000345317 SMARCA2P51531 1590 aa12.99□□□□□ -0.33
SKAP2-201ENST00000345317 RUSC2Q8N2Y8 1516 aa12.96□□□□□ -0.34
SKAP2-201ENST00000345317 FAM50AQ14320 339 aaKnown RBP12.93□□□□□ -0.34
SKAP2-201ENST00000345317 CEP162Q5TB80 1403 aa12.93□□□□□ -0.34
SKAP2-201ENST00000345317 UNC13AQ9UPW8 1703 aa12.92□□□□□ -0.34
SKAP2-201ENST00000345317 DNAJC5BQ9UF47 199 aa12.9□□□□□ -0.34
SKAP2-201ENST00000345317 EIF4G1Q04637 1599 aaKnown RBP12.89□□□□□ -0.35
SKAP2-201ENST00000345317 CLIP1P30622 1438 aa12.88□□□□□ -0.35
SKAP2-201ENST00000345317 GOLGA3Q08378 1498 aa12.85□□□□□ -0.35
SKAP2-201ENST00000345317 EEA1Q15075 1411 aa12.82□□□□□ -0.36
SKAP2-201ENST00000345317 TNIKQ9UKE5 1360 aa12.82□□□□□ -0.36
SKAP2-201ENST00000345317 KIF27Q86VH2 1401 aa12.82□□□□□ -0.36
SKAP2-201ENST00000345317 CADPSQ9ULU8 1353 aa12.82□□□□□ -0.36
SKAP2-201ENST00000345317 CUX2O14529 1486 aa12.81□□□□□ -0.36
SKAP2-201ENST00000345317 CEP164Q9UPV0 1460 aa12.78□□□□□ -0.36
SKAP2-201ENST00000345317 NCAPD3P42695 1498 aa12.78□□□□□ -0.36
SKAP2-201ENST00000345317 TDRD9Q8NDG6 1382 aaKnown RBP12.77□□□□□ -0.37
SKAP2-201ENST00000345317 YTHDC1Q96MU7 727 aaKnown RBP12.75□□□□□ -0.37
SKAP2-201ENST00000345317 RAPGEF2Q9Y4G8 1499 aa12.73□□□□□ -0.37
SKAP2-201ENST00000345317 NEUROD1Q13562 356 aa12.73□□□□□ -0.37
SKAP2-201ENST00000345317 CARMIL1Q5VZK9 1371 aa12.72□□□□□ -0.37
SKAP2-201ENST00000345317 NESP48681 1621 aa12.71□□□□□ -0.37
SKAP2-201ENST00000345317 CHMP7Q8WUX9 453 aaPredicted RBP12.71□□□□□ -0.38
SKAP2-201ENST00000345317 CC2D2AQ9P2K1 1620 aa12.7□□□□□ -0.38
SKAP2-201ENST00000345317 ERCC6Q03468 1493 aa12.69□□□□□ -0.38
SKAP2-201ENST00000345317 FANCD2Q9BXW9 1451 aa12.68□□□□□ -0.38
SKAP2-201ENST00000345317 SYNJ1O43426 1573 aa12.68□□□□□ -0.38
SKAP2-201ENST00000345317 KANK4Q5T7N3 995 aaPredicted RBP12.67□□□□□ -0.38
SKAP2-201ENST00000345317 MYT1LQ9UL68 1186 aa12.67□□□□□ -0.38
SKAP2-201ENST00000345317 ZNF777Q9ULD5 760 aaPredicted RBP12.66□□□□□ -0.38
SKAP2-201ENST00000345317 SCAF1Q9H7N4 1312 aaKnown RBP12.66□□□□□ -0.38
SKAP2-201ENST00000345317 TRIM52Q96A61 297 aa12.65□□□□□ -0.38
SKAP2-201ENST00000345317 RAD54L2Q9Y4B4 1467 aa12.63□□□□□ -0.39
SKAP2-201ENST00000345317 CHIC2Q9UKJ5 165 aa12.63□□□□□ -0.39
SKAP2-201ENST00000345317 PDS5BQ9NTI5 1447 aa12.63□□□□□ -0.39
SKAP2-201ENST00000345317 CFTRP13569 1480 aa12.61□□□□□ -0.39
SKAP2-201ENST00000345317 CNGB1Q14028 1251 aaPredicted RBP12.6□□□□□ -0.39
SKAP2-201ENST00000345317 DIEXFQ68CQ4 756 aaKnown RBP12.6□□□□□ -0.39
SKAP2-201ENST00000345317 FGD5Q6ZNL6 1462 aa12.6□□□□□ -0.39
SKAP2-201ENST00000345317 MTUS2Q5JR59 1369 aa12.57□□□□□ -0.4
SKAP2-201ENST00000345317 VPS8Q8N3P4 1428 aa12.56□□□□□ -0.4
SKAP2-201ENST00000345317 HMGXB3Q12766 1538 aa12.56□□□□□ -0.4
SKAP2-201ENST00000345317 IGF1RP08069 1367 aa12.56□□□□□ -0.4
SKAP2-201ENST00000345317 CENPBP07199 599 aaPredicted RBP12.56□□□□□ -0.4
SKAP2-201ENST00000345317 POLR3GLQ9BT43 218 aa12.55□□□□□ -0.4
SKAP2-201ENST00000345317 CUX1P39880 1505 aa12.55□□□□□ -0.4
SKAP2-201ENST00000345317 PEG3Q9GZU2 1588 aa12.54□□□□□ -0.4
SKAP2-201ENST00000345317 FHOD3Q2V2M9 1422 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms