RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 AEBP2Q6ZN18 517 aaPredicted RBP17.42■□□□□ 0.38
PTCH1-223ENST00000551623 CHIC1Q5VXU3 224 aa16.28■□□□□ 0.2
PTCH1-223ENST00000551623 SENP3Q9H4L4 574 aaPredicted RBP14.91□□□□□ -0.02
PTCH1-223ENST00000551623 PHF23Q9BUL5 403 aaPredicted RBP14.66□□□□□ -0.06
PTCH1-223ENST00000551623 FOXD1Q16676 465 aa13.94□□□□□ -0.18
PTCH1-223ENST00000551623 POTEDQ86YR6 584 aa13.54□□□□□ -0.24
PTCH1-223ENST00000551623 MSH5O43196 834 aa13.21□□□□□ -0.29
PTCH1-223ENST00000551623 PIAS4Q8N2W9 510 aaPredicted RBP12.94□□□□□ -0.34
PTCH1-223ENST00000551623 PLPPR3Q6T4P5 718 aa12.75□□□□□ -0.37
PTCH1-223ENST00000551623 PPP6R1Q9UPN7 881 aa12.74□□□□□ -0.37
PTCH1-223ENST00000551623 ADRA2BP18089 450 aa12.67□□□□□ -0.38
PTCH1-223ENST00000551623 DMRT2Q9Y5R5 561 aa11.77□□□□□ -0.53
PTCH1-223ENST00000551623 MAPK8IP2Q13387 824 aaPredicted RBP11.76□□□□□ -0.53
PTCH1-223ENST00000551623 SCAF1Q9H7N4 1312 aaKnown RBP11.6□□□□□ -0.55
PTCH1-223ENST00000551623 CACNB1Q02641 598 aaPredicted RBP11.56□□□□□ -0.56
PTCH1-223ENST00000551623 DCAF8L1A6NGE4 600 aa11.3□□□□□ -0.6
PTCH1-223ENST00000551623 RNF39Q9H2S5 420 aa11.23□□□□□ -0.61
PTCH1-223ENST00000551623 HOXD11P31277 338 aaPredicted RBP11.19□□□□□ -0.62
PTCH1-223ENST00000551623 PPP4R3CPQ6ZMV5 832 aa11.12□□□□□ -0.63
PTCH1-223ENST00000551623 C1QBPQ07021 282 aaKnown RBP11.04□□□□□ -0.64
PTCH1-223ENST00000551623 CNKSR2Q8WXI2 1034 aa11.01□□□□□ -0.65
PTCH1-223ENST00000551623 RNF216Q9NWF9 866 aaPredicted RBP11□□□□□ -0.65
PTCH1-223ENST00000551623 DNAJC5BQ9UF47 199 aa10.88□□□□□ -0.67
PTCH1-223ENST00000551623 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.65□□□□□ -0.7
PTCH1-223ENST00000551623 NCBP3Q53F19 620 aaKnown RBP10.57□□□□□ -0.72
PTCH1-223ENST00000551623 POTEHQ6S545 545 aa10.54□□□□□ -0.72
PTCH1-223ENST00000551623 NPM3O75607 178 aaKnown RBP10.42□□□□□ -0.74
PTCH1-223ENST00000551623 U3KPZ7 1027 aaPredicted RBP10.4□□□□□ -0.74
PTCH1-223ENST00000551623 DSG3P32926 999 aa10.39□□□□□ -0.75
PTCH1-223ENST00000551623 CAPN15O75808 1086 aa10.36□□□□□ -0.75
PTCH1-223ENST00000551623 SPINK5Q9NQ38 1064 aaPredicted RBP10.36□□□□□ -0.75
PTCH1-223ENST00000551623 TRHP20396 242 aaPredicted RBP10.1□□□□□ -0.79
PTCH1-223ENST00000551623 ABCB7O75027 752 aa10.09□□□□□ -0.79
PTCH1-223ENST00000551623 ZNF219Q9P2Y4 722 aaPredicted RBP10.08□□□□□ -0.8
PTCH1-223ENST00000551623 APLP2Q06481 763 aa10.07□□□□□ -0.8
PTCH1-223ENST00000551623 SLC4A2P04920 1241 aa10.05□□□□□ -0.8
PTCH1-223ENST00000551623 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.97□□□□□ -0.81
PTCH1-223ENST00000551623 HNRNPUL2Q1KMD3 747 aaKnown RBP9.97□□□□□ -0.81
PTCH1-223ENST00000551623 RBM42Q9BTD8 480 aaKnown RBP9.93□□□□□ -0.82
PTCH1-223ENST00000551623 SAMD1Q6SPF0 538 aaPredicted RBP9.89□□□□□ -0.83
PTCH1-223ENST00000551623 KCNA4P22459 653 aa9.88□□□□□ -0.83
PTCH1-223ENST00000551623 CHRDL2Q6WN34 429 aa9.86□□□□□ -0.83
PTCH1-223ENST00000551623 POLA2Q14181 598 aa9.73□□□□□ -0.85
PTCH1-223ENST00000551623 SP7Q8TDD2 431 aaPredicted RBP9.7□□□□□ -0.86
PTCH1-223ENST00000551623 MYCNP04198 464 aaPredicted RBP9.66□□□□□ -0.86
PTCH1-223ENST00000551623 AKT1S1Q96B36 256 aa9.61□□□□□ -0.87
PTCH1-223ENST00000551623 PIP4P2Q8N4L2 257 aa9.54□□□□□ -0.88
PTCH1-223ENST00000551623 REM2Q8IYK8 340 aaPredicted RBP9.51□□□□□ -0.89
PTCH1-223ENST00000551623 ZBTB12Q9Y330 459 aaPredicted RBP9.51□□□□□ -0.89
PTCH1-223ENST00000551623 HAX1O00165 279 aa9.47□□□□□ -0.89
PTCH1-223ENST00000551623 ATF5Q9Y2D1 282 aaPredicted RBP9.46□□□□□ -0.9
PTCH1-223ENST00000551623 OSCARQ8IYS5 282 aa9.45□□□□□ -0.9
PTCH1-223ENST00000551623 PITPNM1O00562 1244 aa9.43□□□□□ -0.9
PTCH1-223ENST00000551623 FXR2P51116 673 aaKnown RBP eCLIP9.42□□□□□ -0.9
PTCH1-223ENST00000551623 FOXD4L1Q9NU39 408 aa9.36□□□□□ -0.91
PTCH1-223ENST00000551623 EVX2Q03828 476 aa9.32□□□□□ -0.92
PTCH1-223ENST00000551623 SLC4A1APQ9BWU0 796 aaKnown RBP9.25□□□□□ -0.93
PTCH1-223ENST00000551623 SPDYE2BA6NHP3 402 aa9.19□□□□□ -0.94
PTCH1-223ENST00000551623 SPDYE6P0CI01 402 aa9.19□□□□□ -0.94
PTCH1-223ENST00000551623 SPDYE2Q495Y8 402 aa9.19□□□□□ -0.94
PTCH1-223ENST00000551623 PRKAR2AP13861 404 aaKnown RBP9.18□□□□□ -0.94
PTCH1-223ENST00000551623 C19orf67A6NJJ6 358 aa9.14□□□□□ -0.95
PTCH1-223ENST00000551623 CLEC11AQ9Y240 323 aa9.13□□□□□ -0.95
PTCH1-223ENST00000551623 SPDYE1Q8NFV5 336 aaPredicted RBP9.12□□□□□ -0.95
PTCH1-223ENST00000551623 FBLN2P98095 1184 aa9.11□□□□□ -0.95
PTCH1-223ENST00000551623 GABBR2O75899 941 aa9.1□□□□□ -0.95
PTCH1-223ENST00000551623 ATXN8OSP0DMR3 200 aa9.09□□□□□ -0.95
PTCH1-223ENST00000551623 LHX8Q68G74 356 aa9.09□□□□□ -0.95
PTCH1-223ENST00000551623 ZBTB22O15209 634 aa9.08□□□□□ -0.96
PTCH1-223ENST00000551623 SSUH2Q9Y2M2 353 aa9.03□□□□□ -0.96
PTCH1-223ENST00000551623 ZNF692Q9BU19 519 aaPredicted RBP9.02□□□□□ -0.97
PTCH1-223ENST00000551623 MKRN4PQ13434 485 aaPredicted RBP9□□□□□ -0.97
PTCH1-223ENST00000551623 CHADLQ6NUI6 762 aa9□□□□□ -0.97
PTCH1-223ENST00000551623 PRR29P0C7W0 189 aa8.93□□□□□ -0.98
PTCH1-223ENST00000551623 POTEIP0CG38 1075 aa8.9□□□□□ -0.98
PTCH1-223ENST00000551623 CD44P16070 742 aaKnown RBP8.87□□□□□ -0.99
PTCH1-223ENST00000551623 PABPN1Q86U42 306 aaKnown RBP eCLIP8.87□□□□□ -0.99
PTCH1-223ENST00000551623 CLCN6P51797 869 aa8.83□□□□□ -1
PTCH1-223ENST00000551623 PLSCR2Q9NRY7 297 aa8.83□□□□□ -1
PTCH1-223ENST00000551623 FARP1Q9Y4F1 1045 aaPredicted RBP8.82□□□□□ -1
PTCH1-223ENST00000551623 DCBLD2Q96PD2 775 aa8.77□□□□□ -1.01
PTCH1-223ENST00000551623 ZNF579Q8NAF0 562 aaKnown RBP8.71□□□□□ -1.02
PTCH1-223ENST00000551623 ZRANB1Q9UGI0 708 aa8.68□□□□□ -1.02
PTCH1-223ENST00000551623 OTUD5Q96G74 571 aa8.64□□□□□ -1.03
PTCH1-223ENST00000551623 GALR2O43603 387 aaPredicted RBP8.63□□□□□ -1.03
PTCH1-223ENST00000551623 CREBZFQ9NS37 354 aa8.61□□□□□ -1.03
PTCH1-223ENST00000551623 POTEB2H3BUK9 544 aa8.6□□□□□ -1.03
PTCH1-223ENST00000551623 POTEMA6NI47 508 aa8.59□□□□□ -1.03
PTCH1-223ENST00000551623 POTEGQ6S5H5 508 aa8.55□□□□□ -1.04
PTCH1-223ENST00000551623 STAG3Q9UJ98 1225 aa8.55□□□□□ -1.04
PTCH1-223ENST00000551623 PAK3O75914 559 aaPredicted RBP8.53□□□□□ -1.04
PTCH1-223ENST00000551623 PHF12Q96QT6 1004 aa8.53□□□□□ -1.04
PTCH1-223ENST00000551623 PELP1Q8IZL8 1130 aaKnown RBP8.49□□□□□ -1.05
PTCH1-223ENST00000551623 PCDH10Q9P2E7 1040 aa8.46□□□□□ -1.06
PTCH1-223ENST00000551623 NPM1P06748 294 aaKnown RBP eCLIP8.44□□□□□ -1.06
PTCH1-223ENST00000551623 METRNQ9UJH8 293 aa8.44□□□□□ -1.06
PTCH1-223ENST00000551623 ASTLQ6HA08 431 aaPredicted RBP8.43□□□□□ -1.06
PTCH1-223ENST00000551623 MNX1P50219 401 aaPredicted RBP8.41□□□□□ -1.06
PTCH1-223ENST00000551623 SLC39A7Q92504 469 aa8.41□□□□□ -1.06
PTCH1-223ENST00000551623 MS4A3Q96HJ5 214 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms