RNA–Protein interactions for RNA: ENST00000465213.1

VPS8-217, Transcript of VPS8, CORVET complex subunit, humanhuman

TSL 5

Gene VPS8, Length 656 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8-217ENST00000465213 AEBP2Q6ZN18 517 aaPredicted RBP28.1■■■□□ 2.09
VPS8-217ENST00000465213 CHIC1Q5VXU3 224 aa26.74■■□□□ 1.87
VPS8-217ENST00000465213 SENP3Q9H4L4 574 aaPredicted RBP23.99■■□□□ 1.43
VPS8-217ENST00000465213 PHF23Q9BUL5 403 aaPredicted RBP23.65■■□□□ 1.38
VPS8-217ENST00000465213 FOXD1Q16676 465 aa22.33■■□□□ 1.17
VPS8-217ENST00000465213 PLPPR3Q6T4P5 718 aa21.37■■□□□ 1.01
VPS8-217ENST00000465213 MSH5O43196 834 aa20.92■□□□□ 0.94
VPS8-217ENST00000465213 PPP6R1Q9UPN7 881 aa20.88■□□□□ 0.93
VPS8-217ENST00000465213 PIAS4Q8N2W9 510 aaPredicted RBP20.85■□□□□ 0.93
VPS8-217ENST00000465213 ADRA2BP18089 450 aa20.79■□□□□ 0.92
VPS8-217ENST00000465213 POTEDQ86YR6 584 aa20.35■□□□□ 0.85
VPS8-217ENST00000465213 MAPK8IP2Q13387 824 aaPredicted RBP19.08■□□□□ 0.64
VPS8-217ENST00000465213 SCAF1Q9H7N4 1312 aaKnown RBP19.07■□□□□ 0.64
VPS8-217ENST00000465213 DMRT2Q9Y5R5 561 aa19.04■□□□□ 0.64
VPS8-217ENST00000465213 PPP4R3CPQ6ZMV5 832 aa18.7■□□□□ 0.58
VPS8-217ENST00000465213 CNKSR2Q8WXI2 1034 aa18.38■□□□□ 0.53
VPS8-217ENST00000465213 HOXD11P31277 338 aaPredicted RBP18.37■□□□□ 0.53
VPS8-217ENST00000465213 RNF216Q9NWF9 866 aaPredicted RBP18.22■□□□□ 0.51
VPS8-217ENST00000465213 DCAF8L1A6NGE4 600 aa18.12■□□□□ 0.49
VPS8-217ENST00000465213 NCBP3Q53F19 620 aaKnown RBP18.01■□□□□ 0.47
VPS8-217ENST00000465213 CACNB1Q02641 598 aaPredicted RBP17.87■□□□□ 0.45
VPS8-217ENST00000465213 RNF39Q9H2S5 420 aa17.86■□□□□ 0.45
VPS8-217ENST00000465213 DNAJC5BQ9UF47 199 aa17.81■□□□□ 0.44
VPS8-217ENST00000465213 NPM3O75607 178 aaKnown RBP17.74■□□□□ 0.43
VPS8-217ENST00000465213 C1QBPQ07021 282 aaKnown RBP17.61■□□□□ 0.41
VPS8-217ENST00000465213 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.41■□□□□ 0.38
VPS8-217ENST00000465213 KCNA4P22459 653 aa17.4■□□□□ 0.38
VPS8-217ENST00000465213 U3KPZ7 1027 aaPredicted RBP17.09■□□□□ 0.33
VPS8-217ENST00000465213 SLC4A2P04920 1241 aa16.95■□□□□ 0.3
VPS8-217ENST00000465213 SPINK5Q9NQ38 1064 aaPredicted RBP16.8■□□□□ 0.28
VPS8-217ENST00000465213 CAPN15O75808 1086 aa16.75■□□□□ 0.27
VPS8-217ENST00000465213 DSG3P32926 999 aa16.71■□□□□ 0.27
VPS8-217ENST00000465213 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.64■□□□□ 0.25
VPS8-217ENST00000465213 APLP2Q06481 763 aa16.64■□□□□ 0.25
VPS8-217ENST00000465213 HNRNPUL2Q1KMD3 747 aaKnown RBP16.64■□□□□ 0.25
VPS8-217ENST00000465213 SAMD1Q6SPF0 538 aaPredicted RBP16.54■□□□□ 0.24
VPS8-217ENST00000465213 ZNF219Q9P2Y4 722 aaPredicted RBP16.53■□□□□ 0.24
VPS8-217ENST00000465213 TRHP20396 242 aaPredicted RBP16.48■□□□□ 0.23
VPS8-217ENST00000465213 MYCNP04198 464 aaPredicted RBP16.43■□□□□ 0.22
VPS8-217ENST00000465213 SLC4A1APQ9BWU0 796 aaKnown RBP16.43■□□□□ 0.22
VPS8-217ENST00000465213 ABCB7O75027 752 aa16.35■□□□□ 0.21
VPS8-217ENST00000465213 FOXD4L1Q9NU39 408 aa16.26■□□□□ 0.19
VPS8-217ENST00000465213 POLA2Q14181 598 aa16.07■□□□□ 0.16
VPS8-217ENST00000465213 ZBTB22O15209 634 aa16.01■□□□□ 0.15
VPS8-217ENST00000465213 ATF5Q9Y2D1 282 aaPredicted RBP16■□□□□ 0.15
VPS8-217ENST00000465213 RBM42Q9BTD8 480 aaKnown RBP15.96■□□□□ 0.15
VPS8-217ENST00000465213 POTEHQ6S545 545 aa15.95■□□□□ 0.14
VPS8-217ENST00000465213 ATXN8OSP0DMR3 200 aa15.81■□□□□ 0.12
VPS8-217ENST00000465213 ZBTB12Q9Y330 459 aaPredicted RBP15.81■□□□□ 0.12
VPS8-217ENST00000465213 AKT1S1Q96B36 256 aa15.6■□□□□ 0.09
VPS8-217ENST00000465213 CHRDL2Q6WN34 429 aa15.58■□□□□ 0.08
VPS8-217ENST00000465213 OSCARQ8IYS5 282 aa15.56■□□□□ 0.08
VPS8-217ENST00000465213 REM2Q8IYK8 340 aaPredicted RBP15.43■□□□□ 0.06
VPS8-217ENST00000465213 FBLN2P98095 1184 aa15.38■□□□□ 0.05
VPS8-217ENST00000465213 SPDYE2BA6NHP3 402 aa15.32■□□□□ 0.04
VPS8-217ENST00000465213 SPDYE6P0CI01 402 aa15.32■□□□□ 0.04
VPS8-217ENST00000465213 SPDYE2Q495Y8 402 aa15.32■□□□□ 0.04
VPS8-217ENST00000465213 MKRN4PQ13434 485 aaPredicted RBP15.3■□□□□ 0.04
VPS8-217ENST00000465213 CSRNP3Q8WYN3 585 aa15.29■□□□□ 0.04
VPS8-217ENST00000465213 PITPNM1O00562 1244 aa15.25■□□□□ 0.03
VPS8-217ENST00000465213 PIP4P2Q8N4L2 257 aa15.21■□□□□ 0.03
VPS8-217ENST00000465213 FXR2P51116 673 aaKnown RBP eCLIP15.15■□□□□ 0.02
VPS8-217ENST00000465213 SSUH2Q9Y2M2 353 aa15.14■□□□□ 0.01
VPS8-217ENST00000465213 ZNF692Q9BU19 519 aaPredicted RBP15.09■□□□□ 0.01
VPS8-217ENST00000465213 SPDYE1Q8NFV5 336 aaPredicted RBP15.02■□□□□ -0
VPS8-217ENST00000465213 EHMT2Q96KQ7 1210 aa15.02■□□□□ -0
VPS8-217ENST00000465213 SP7Q8TDD2 431 aaPredicted RBP14.97□□□□□ -0.01
VPS8-217ENST00000465213 CLEC11AQ9Y240 323 aa14.93□□□□□ -0.02
VPS8-217ENST00000465213 HAX1O00165 279 aa14.88□□□□□ -0.03
VPS8-217ENST00000465213 PABPN1Q86U42 306 aaKnown RBP eCLIP14.86□□□□□ -0.03
VPS8-217ENST00000465213 PRKAR2AP13861 404 aaKnown RBP14.84□□□□□ -0.03
VPS8-217ENST00000465213 PRR29P0C7W0 189 aa14.72□□□□□ -0.05
VPS8-217ENST00000465213 EVX2Q03828 476 aa14.72□□□□□ -0.05
VPS8-217ENST00000465213 C19orf67A6NJJ6 358 aa14.66□□□□□ -0.06
VPS8-217ENST00000465213 CHADLQ6NUI6 762 aa14.65□□□□□ -0.06
VPS8-217ENST00000465213 SPDYE4A6NLX3 237 aa14.56□□□□□ -0.08
VPS8-217ENST00000465213 STAG3Q9UJ98 1225 aa14.51□□□□□ -0.09
VPS8-217ENST00000465213 FARP1Q9Y4F1 1045 aaPredicted RBP14.49□□□□□ -0.09
VPS8-217ENST00000465213 GABBR2O75899 941 aa14.41□□□□□ -0.1
VPS8-217ENST00000465213 CREBZFQ9NS37 354 aa14.39□□□□□ -0.11
VPS8-217ENST00000465213 CD44P16070 742 aaKnown RBP14.38□□□□□ -0.11
VPS8-217ENST00000465213 PROM2Q8N271 834 aa14.31□□□□□ -0.12
VPS8-217ENST00000465213 CLCN6P51797 869 aa14.28□□□□□ -0.12
VPS8-217ENST00000465213 ZNF579Q8NAF0 562 aaKnown RBP14.21□□□□□ -0.13
VPS8-217ENST00000465213 MNX1P50219 401 aaPredicted RBP14.18□□□□□ -0.14
VPS8-217ENST00000465213 ZRANB1Q9UGI0 708 aa14.16□□□□□ -0.14
VPS8-217ENST00000465213 NPM1P06748 294 aaKnown RBP eCLIP14.12□□□□□ -0.15
VPS8-217ENST00000465213 POTEIP0CG38 1075 aa14.11□□□□□ -0.15
VPS8-217ENST00000465213 PAK3O75914 559 aaPredicted RBP14.07□□□□□ -0.16
VPS8-217ENST00000465213 LHX8Q68G74 356 aa14.02□□□□□ -0.17
VPS8-217ENST00000465213 DCBLD2Q96PD2 775 aa14□□□□□ -0.17
VPS8-217ENST00000465213 GALR2O43603 387 aaPredicted RBP13.98□□□□□ -0.17
VPS8-217ENST00000465213 PHF12Q96QT6 1004 aa13.96□□□□□ -0.17
VPS8-217ENST00000465213 PLEKHG5O94827 1062 aa13.87□□□□□ -0.19
VPS8-217ENST00000465213 MIER1Q8N108 512 aa13.85□□□□□ -0.19
VPS8-217ENST00000465213 FKBP8Q14318 412 aa13.83□□□□□ -0.2
VPS8-217ENST00000465213 CCDC61Q9Y6R9 512 aa13.83□□□□□ -0.2
VPS8-217ENST00000465213 TSPYL2Q9H2G4 693 aaPredicted RBP13.81□□□□□ -0.2
VPS8-217ENST00000465213 MS4A3Q96HJ5 214 aa13.8□□□□□ -0.2
VPS8-217ENST00000465213 PLCD3Q8N3E9 789 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms