RNA–Protein interactions for RNA: ENST00000504078.1

USP46-205, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 4

Gene USP46, Length 573 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-205ENST00000504078 AEBP2Q6ZN18 517 aaPredicted RBP15.3■□□□□ 0.04
USP46-205ENST00000504078 CHIC1Q5VXU3 224 aa14.39□□□□□ -0.11
USP46-205ENST00000504078 SENP3Q9H4L4 574 aaPredicted RBP13.21□□□□□ -0.29
USP46-205ENST00000504078 PHF23Q9BUL5 403 aaPredicted RBP12.94□□□□□ -0.34
USP46-205ENST00000504078 FOXD1Q16676 465 aa12.3□□□□□ -0.44
USP46-205ENST00000504078 POTEDQ86YR6 584 aa12.1□□□□□ -0.47
USP46-205ENST00000504078 MSH5O43196 834 aa11.75□□□□□ -0.53
USP46-205ENST00000504078 PIAS4Q8N2W9 510 aaPredicted RBP11.41□□□□□ -0.58
USP46-205ENST00000504078 PLPPR3Q6T4P5 718 aa11.18□□□□□ -0.62
USP46-205ENST00000504078 PPP6R1Q9UPN7 881 aa11.16□□□□□ -0.62
USP46-205ENST00000504078 ADRA2BP18089 450 aa11.1□□□□□ -0.63
USP46-205ENST00000504078 DMRT2Q9Y5R5 561 aa10.39□□□□□ -0.75
USP46-205ENST00000504078 MAPK8IP2Q13387 824 aaPredicted RBP10.31□□□□□ -0.76
USP46-205ENST00000504078 CACNB1Q02641 598 aaPredicted RBP10.3□□□□□ -0.76
USP46-205ENST00000504078 SCAF1Q9H7N4 1312 aaKnown RBP10.29□□□□□ -0.76
USP46-205ENST00000504078 RNF39Q9H2S5 420 aa9.95□□□□□ -0.82
USP46-205ENST00000504078 DCAF8L1A6NGE4 600 aa9.94□□□□□ -0.82
USP46-205ENST00000504078 HOXD11P31277 338 aaPredicted RBP9.86□□□□□ -0.83
USP46-205ENST00000504078 C1QBPQ07021 282 aaKnown RBP9.82□□□□□ -0.84
USP46-205ENST00000504078 PPP4R3CPQ6ZMV5 832 aa9.71□□□□□ -0.86
USP46-205ENST00000504078 RNF216Q9NWF9 866 aaPredicted RBP9.69□□□□□ -0.86
USP46-205ENST00000504078 DNAJC5BQ9UF47 199 aa9.68□□□□□ -0.86
USP46-205ENST00000504078 CNKSR2Q8WXI2 1034 aa9.67□□□□□ -0.86
USP46-205ENST00000504078 POTEHQ6S545 545 aa9.42□□□□□ -0.9
USP46-205ENST00000504078 NISCHQ9Y2I1 1504 aa9.41□□□□□ -0.9
USP46-205ENST00000504078 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.38□□□□□ -0.91
USP46-205ENST00000504078 NCBP3Q53F19 620 aaKnown RBP9.28□□□□□ -0.92
USP46-205ENST00000504078 DSG3P32926 999 aa9.17□□□□□ -0.94
USP46-205ENST00000504078 CAPN15O75808 1086 aa9.12□□□□□ -0.95
USP46-205ENST00000504078 U3KPZ7 1027 aaPredicted RBP9.1□□□□□ -0.95
USP46-205ENST00000504078 SPINK5Q9NQ38 1064 aaPredicted RBP9.07□□□□□ -0.96
USP46-205ENST00000504078 NPM3O75607 178 aaKnown RBP9.06□□□□□ -0.96
USP46-205ENST00000504078 APLP2Q06481 763 aa8.93□□□□□ -0.98
USP46-205ENST00000504078 ZNF219Q9P2Y4 722 aaPredicted RBP8.88□□□□□ -0.99
USP46-205ENST00000504078 TRHP20396 242 aaPredicted RBP8.86□□□□□ -0.99
USP46-205ENST00000504078 RBM42Q9BTD8 480 aaKnown RBP8.83□□□□□ -1
USP46-205ENST00000504078 ABCC9O60706 1549 aa8.83□□□□□ -1
USP46-205ENST00000504078 ABCB7O75027 752 aa8.82□□□□□ -1
USP46-205ENST00000504078 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.8□□□□□ -1
USP46-205ENST00000504078 HNRNPUL2Q1KMD3 747 aaKnown RBP8.8□□□□□ -1
USP46-205ENST00000504078 SLC4A2P04920 1241 aa8.75□□□□□ -1.01
USP46-205ENST00000504078 CHRDL2Q6WN34 429 aa8.74□□□□□ -1.01
USP46-205ENST00000504078 SAMD1Q6SPF0 538 aaPredicted RBP8.7□□□□□ -1.02
USP46-205ENST00000504078 SP7Q8TDD2 431 aaPredicted RBP8.64□□□□□ -1.03
USP46-205ENST00000504078 CCDC180Q9P1Z9 1646 aa8.56□□□□□ -1.04
USP46-205ENST00000504078 POLA2Q14181 598 aa8.55□□□□□ -1.04
USP46-205ENST00000504078 AKT1S1Q96B36 256 aa8.51□□□□□ -1.05
USP46-205ENST00000504078 KCNA4P22459 653 aa8.49□□□□□ -1.05
USP46-205ENST00000504078 MYCNP04198 464 aaPredicted RBP8.43□□□□□ -1.06
USP46-205ENST00000504078 PIP4P2Q8N4L2 257 aa8.42□□□□□ -1.06
USP46-205ENST00000504078 HAX1O00165 279 aa8.41□□□□□ -1.06
USP46-205ENST00000504078 ZBTB12Q9Y330 459 aaPredicted RBP8.41□□□□□ -1.06
USP46-205ENST00000504078 REM2Q8IYK8 340 aaPredicted RBP8.4□□□□□ -1.06
USP46-205ENST00000504078 FXR2P51116 673 aaKnown RBP eCLIP8.34□□□□□ -1.07
USP46-205ENST00000504078 PITPNM1O00562 1244 aa8.29□□□□□ -1.08
USP46-205ENST00000504078 OSCARQ8IYS5 282 aa8.24□□□□□ -1.09
USP46-205ENST00000504078 RB1CC1Q8TDY2 1594 aa8.23□□□□□ -1.09
USP46-205ENST00000504078 EVX2Q03828 476 aa8.21□□□□□ -1.1
USP46-205ENST00000504078 ATF5Q9Y2D1 282 aaPredicted RBP8.18□□□□□ -1.1
USP46-205ENST00000504078 PABPN1Q86U42 306 aaKnown RBP eCLIP8.15□□□□□ -1.1
USP46-205ENST00000504078 UNC13AQ9UPW8 1703 aa8.13□□□□□ -1.11
USP46-205ENST00000504078 LHX8Q68G74 356 aa8.1□□□□□ -1.11
USP46-205ENST00000504078 FOXD4L1Q9NU39 408 aa8.1□□□□□ -1.11
USP46-205ENST00000504078 SPDYE2BA6NHP3 402 aa8.09□□□□□ -1.11
USP46-205ENST00000504078 SPDYE6P0CI01 402 aa8.09□□□□□ -1.11
USP46-205ENST00000504078 PRKAR2AP13861 404 aaKnown RBP8.09□□□□□ -1.11
USP46-205ENST00000504078 SPDYE2Q495Y8 402 aa8.09□□□□□ -1.11
USP46-205ENST00000504078 NACADO15069 1562 aa8.09□□□□□ -1.11
USP46-205ENST00000504078 C19orf67A6NJJ6 358 aa8.08□□□□□ -1.12
USP46-205ENST00000504078 DCAF8L2P0C7V8 631 aa8.06□□□□□ -1.12
USP46-205ENST00000504078 GABBR2O75899 941 aa8.05□□□□□ -1.12
USP46-205ENST00000504078 SPDYE1Q8NFV5 336 aaPredicted RBP8.05□□□□□ -1.12
USP46-205ENST00000504078 BICRAQ9NZM4 1560 aa8.04□□□□□ -1.12
USP46-205ENST00000504078 FBLN2P98095 1184 aa8□□□□□ -1.13
USP46-205ENST00000504078 CLEC11AQ9Y240 323 aa8□□□□□ -1.13
USP46-205ENST00000504078 SLC4A1APQ9BWU0 796 aaKnown RBP7.97□□□□□ -1.13
USP46-205ENST00000504078 ATXN8OSP0DMR3 200 aa7.96□□□□□ -1.14
USP46-205ENST00000504078 CC2D2AQ9P2K1 1620 aa7.94□□□□□ -1.14
USP46-205ENST00000504078 CECR2Q9BXF3 1484 aa7.92□□□□□ -1.14
USP46-205ENST00000504078 CLCN6P51797 869 aa7.91□□□□□ -1.14
USP46-205ENST00000504078 SCRIBQ14160 1630 aa7.91□□□□□ -1.14
USP46-205ENST00000504078 ZNF692Q9BU19 519 aaPredicted RBP7.9□□□□□ -1.14
USP46-205ENST00000504078 SSUH2Q9Y2M2 353 aa7.9□□□□□ -1.14
USP46-205ENST00000504078 PLSCR2Q9NRY7 297 aa7.89□□□□□ -1.15
USP46-205ENST00000504078 EIF4G1Q04637 1599 aaKnown RBP7.85□□□□□ -1.15
USP46-205ENST00000504078 PRR29P0C7W0 189 aa7.85□□□□□ -1.15
USP46-205ENST00000504078 CHADLQ6NUI6 762 aa7.85□□□□□ -1.15
USP46-205ENST00000504078 POTEIP0CG38 1075 aa7.84□□□□□ -1.15
USP46-205ENST00000504078 MYO15BQ96JP2 1530 aa7.83□□□□□ -1.16
USP46-205ENST00000504078 CD44P16070 742 aaKnown RBP7.8□□□□□ -1.16
USP46-205ENST00000504078 MKRN4PQ13434 485 aaPredicted RBP7.8□□□□□ -1.16
USP46-205ENST00000504078 ZCCHC6Q5VYS8 1495 aaKnown RBP7.8□□□□□ -1.16
USP46-205ENST00000504078 SHROOM4Q9ULL8 1493 aa7.8□□□□□ -1.16
USP46-205ENST00000504078 DCBLD2Q96PD2 775 aa7.77□□□□□ -1.17
USP46-205ENST00000504078 ZBTB22O15209 634 aa7.76□□□□□ -1.17
USP46-205ENST00000504078 FARP1Q9Y4F1 1045 aaPredicted RBP7.76□□□□□ -1.17
USP46-205ENST00000504078 DNAJC5Q9H3Z4 198 aa7.75□□□□□ -1.17
USP46-205ENST00000504078 DCAF1Q9Y4B6 1507 aa7.69□□□□□ -1.18
USP46-205ENST00000504078 ZNF579Q8NAF0 562 aaKnown RBP7.68□□□□□ -1.18
USP46-205ENST00000504078 OTUD5Q96G74 571 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms