Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CHMP2AO43633 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.57■□□□□ 0.88
CHMP2AO43633 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.57■□□□□ 0.88
CHMP2AO43633 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.57■□□□□ 0.88
CHMP2AO43633 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.57■□□□□ 0.88
CHMP2AO43633 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.57■□□□□ 0.88
CHMP2AO43633 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.57■□□□□ 0.88
CHMP2AO43633 TEN1-204ENST00000588202 862 ntTSL 3 BASIC20.57■□□□□ 0.88
CHMP2AO43633 AC005332.3-201ENST00000589904 676 ntBASIC20.57■□□□□ 0.88
CHMP2AO43633 AL024508.2-201ENST00000607749 1894 ntBASIC20.57■□□□□ 0.88
CHMP2AO43633 AC069148.1-201ENST00000608741 768 ntBASIC20.57■□□□□ 0.88
CHMP2AO43633 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.57■□□□□ 0.88
CHMP2AO43633 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.57■□□□□ 0.88
CHMP2AO43633 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
CHMP2AO43633 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.57■□□□□ 0.88
CHMP2AO43633 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.57■□□□□ 0.88
CHMP2AO43633 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP2AO43633 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP2AO43633 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP2AO43633 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CHMP2AO43633 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CHMP2AO43633 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP2AO43633 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP2AO43633 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP2AO43633 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CHMP2AO43633 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP2AO43633 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP2AO43633 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.56■□□□□ 0.88
CHMP2AO43633 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP2AO43633 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.56■□□□□ 0.88
CHMP2AO43633 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP2AO43633 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP2AO43633 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CHMP2AO43633 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CHMP2AO43633 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP2AO43633 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP2AO43633 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.56■□□□□ 0.88
CHMP2AO43633 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP2AO43633 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP2AO43633 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CHMP2AO43633 AC104581.1-202ENST00000635932 2618 ntBASIC20.56■□□□□ 0.88
CHMP2AO43633 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CHMP2AO43633 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
CHMP2AO43633 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CHMP2AO43633 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
CHMP2AO43633 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.55■□□□□ 0.88
CHMP2AO43633 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.55■□□□□ 0.88
CHMP2AO43633 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 TSPY22P-201ENST00000427496 604 ntBASIC20.55■□□□□ 0.88
CHMP2AO43633 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.55■□□□□ 0.88
CHMP2AO43633 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.55■□□□□ 0.88
CHMP2AO43633 LINC01126-201ENST00000623515 1646 ntBASIC20.55■□□□□ 0.88
CHMP2AO43633 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
CHMP2AO43633 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
CHMP2AO43633 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CHMP2AO43633 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP2AO43633 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.54■□□□□ 0.88
CHMP2AO43633 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP2AO43633 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP2AO43633 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CHMP2AO43633 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP2AO43633 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.54■□□□□ 0.88
CHMP2AO43633 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP2AO43633 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CHMP2AO43633 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.54■□□□□ 0.88
CHMP2AO43633 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.54■□□□□ 0.88
CHMP2AO43633 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CHMP2AO43633 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.54■□□□□ 0.88
CHMP2AO43633 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CHMP2AO43633 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms