Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 PXN-206ENST00000458477 3807 ntTSL 1 (best) BASIC10.94□□□□□ -0.661e-6■■■□□ 15.4
UPF1Q92900 PXN-202ENST00000267257 3835 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.691e-6■■■□□ 15.4
UPF1Q92900 GNA12-208ENST00000496740 2450 ntTSL 215.58■□□□□ 0.096e-7■■■□□ 15.4
UPF1Q92900 ATXN7L3B-201ENST00000519948 7604 ntAPPRIS P1 BASIC12.75□□□□□ -0.372e-7■■■□□ 15.4
UPF1Q92900 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.972e-8■■■□□ 15.4
UPF1Q92900 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.263e-6■■■□□ 15.4
UPF1Q92900 KIF5A-202ENST00000455537 5824 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.678e-7■■■□□ 15.4
UPF1Q92900 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.041e-7■■■□□ 15.4
UPF1Q92900 COX7A2L-206ENST00000468711 516 ntTSL 312.87□□□□□ -0.351e-7■■■□□ 15.4
UPF1Q92900 COX7A2L-207ENST00000482463 1918 ntTSL 212.71□□□□□ -0.371e-7■■■□□ 15.4
UPF1Q92900 COX7A2L-202ENST00000378669 3056 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.381e-7■■■□□ 15.4
UPF1Q92900 NLN-207ENST00000509935 1106 ntTSL 511.8□□□□□ -0.522e-7■■■□□ 15.3
UPF1Q92900 NLN-201ENST00000380985 8661 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.832e-7■■■□□ 15.3
UPF1Q92900 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.9□□□□□ -1.462e-7■■■□□ 15.3
UPF1Q92900 RFNG-202ENST00000429557 994 ntTSL 5 BASIC18.38■□□□□ 0.536e-12■■■□□ 15.3
UPF1Q92900 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.925e-12■■■□□ 15.3
UPF1Q92900 HOXB7-203ENST00000567101 528 ntTSL 216.67■□□□□ 0.265e-12■■■□□ 15.3
UPF1Q92900 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.539e-7■■■□□ 15.3
UPF1Q92900 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC25.83■■□□□ 1.732e-7■■■□□ 15.3
UPF1Q92900 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.791e-7■■■□□ 15.3
UPF1Q92900 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.641e-16■■■□□ 15.3
UPF1Q92900 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.262e-7■■■□□ 15.3
UPF1Q92900 ZYX-203ENST00000392910 2123 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.242e-7■■■□□ 15.3
UPF1Q92900 ZYX-202ENST00000354434 2050 ntAPPRIS ALT2 TSL 215.73■□□□□ 0.112e-7■■■□□ 15.3
UPF1Q92900 CXorf56-203ENST00000536133 1089 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.522e-7■■■□□ 15.3
UPF1Q92900 SET-204ENST00000372692 2850 ntTSL 1 (best) BASIC10.06□□□□□ -0.81e-16■■■□□ 15.3
UPF1Q92900 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC7.6□□□□□ -1.191e-9■■■□□ 15.3
UPF1Q92900 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.351e-9■■■□□ 15.3
UPF1Q92900 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC29.3■■■□□ 2.282e-6■■■□□ 15.3
UPF1Q92900 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.012e-6■■■□□ 15.3
UPF1Q92900 FAM102B-203ENST00000483371 8333 ntTSL 22.75□□□□□ -1.972e-6■■■□□ 15.3
UPF1Q92900 PLEKHJ1-202ENST00000585423 494 ntTSL 238.67■■■■□ 3.787e-13■■■□□ 15.3
UPF1Q92900 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.997e-13■■■□□ 15.3
UPF1Q92900 MTURN-202ENST00000324489 5605 ntTSL 1 (best) BASIC8□□□□□ -1.137e-13■■■□□ 15.3
UPF1Q92900 RNF216P1-201ENST00000403969 1360 ntTSL 1 (best)20.73■□□□□ 0.916e-7■■■□□ 15.3
UPF1Q92900 MADD-216ENST00000469699 924 ntTSL 1 (best)14.54□□□□□ -0.084e-7■■■□□ 15.3
UPF1Q92900 MADD-205ENST00000395344 4988 ntAPPRIS ALT2 TSL 2 BASIC10.02□□□□□ -0.814e-7■■■□□ 15.3
UPF1Q92900 API5-201ENST00000378852 3714 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.616e-7■■■□□ 15.3
UPF1Q92900 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC31.7■■■□□ 2.674e-8■■■□□ 15.3
UPF1Q92900 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC16.41■□□□□ 0.224e-8■■■□□ 15.3
UPF1Q92900 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.09■□□□□ 0.174e-8■■■□□ 15.3
UPF1Q92900 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.044e-8■■■□□ 15.3
UPF1Q92900 NEDD4L-224ENST00000588712 2066 ntTSL 212.91□□□□□ -0.344e-8■■■□□ 15.3
UPF1Q92900 NEDD4L-201ENST00000256830 2920 ntTSL 5 BASIC10.41□□□□□ -0.744e-8■■■□□ 15.3
UPF1Q92900 NEDD4L-206ENST00000431212 3338 ntTSL 1 (best) BASIC9.74□□□□□ -0.854e-8■■■□□ 15.3
UPF1Q92900 NEDD4L-207ENST00000435432 3417 ntTSL 1 (best) BASIC9.38□□□□□ -0.914e-8■■■□□ 15.3
UPF1Q92900 NEDD4L-203ENST00000357895 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC9.06□□□□□ -0.964e-8■■■□□ 15.3
UPF1Q92900 NEDD4L-214ENST00000586263 3347 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.074e-8■■■□□ 15.3
UPF1Q92900 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.588e-8■■■□□ 15.3
UPF1Q92900 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.858e-8■■■□□ 15.3
UPF1Q92900 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.178e-8■■■□□ 15.3
UPF1Q92900 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.78■□□□□ 0.128e-8■■■□□ 15.3
UPF1Q92900 TMED7-201ENST00000456936 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.038e-8■■■□□ 15.3
UPF1Q92900 TMED7-TICAM2-203ENST00000514548 736 ntTSL 210.36□□□□□ -0.758e-8■■■□□ 15.3
UPF1Q92900 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC18.41■□□□□ 0.541e-9■■■□□ 15.3
UPF1Q92900 IPP-203ENST00000461718 399 ntTSL 512.26□□□□□ -0.453e-6■■■□□ 15.3
UPF1Q92900 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.153e-8■■■□□ 15.2
UPF1Q92900 SAMD4B-213ENST00000610417 3664 ntAPPRIS P3 TSL 2 BASIC11.89□□□□□ -0.513e-8■■■□□ 15.2
UPF1Q92900 SAMD4B-214ENST00000611159 3662 ntTSL 5 BASIC11.89□□□□□ -0.513e-8■■■□□ 15.2
UPF1Q92900 NAA50-203ENST00000477813 1945 ntTSL 5 BASIC17.03■□□□□ 0.327e-9■■■□□ 15.2
UPF1Q92900 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.069e-13■■■□□ 15.2
UPF1Q92900 PIGQ-217ENST00000635205 936 ntTSL 523.89■■□□□ 1.412e-8■■■□□ 15.2
UPF1Q92900 SKA2-201ENST00000330137 2798 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.987e-8■■■□□ 15.2
UPF1Q92900 ACTR2-201ENST00000260641 3861 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.898e-22■■■□□ 15.2
UPF1Q92900 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.445e-7■■■□□ 15.2
UPF1Q92900 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.21■□□□□ 0.355e-7■■■□□ 15.2
UPF1Q92900 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.335e-7■■■□□ 15.2
UPF1Q92900 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC22.92■■□□□ 1.262e-6■■■□□ 15.2
UPF1Q92900 SORBS3-204ENST00000517962 885 ntTSL 215.7■□□□□ 0.12e-6■■■□□ 15.2
UPF1Q92900 SORBS3-201ENST00000240123 3459 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.492e-6■■■□□ 15.2
UPF1Q92900 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.245e-7■■■□□ 15.2
UPF1Q92900 RAC3-204ENST00000585014 798 ntTSL 226.03■■□□□ 1.765e-7■■■□□ 15.2
UPF1Q92900 MED22-202ENST00000371999 987 ntTSL 3 BASIC25.34■■□□□ 1.659e-8■■■□□ 15.2
UPF1Q92900 SLC38A2-208ENST00000549258 4384 ntTSL 24.42□□□□□ -1.71e-8■■■□□ 15.2
UPF1Q92900 MTR-201ENST00000366576 5234 ntTSL 1 (best)10.7□□□□□ -0.75e-7■■■□□ 15.2
UPF1Q92900 MTR-204ENST00000470570 4175 ntTSL 29.77□□□□□ -0.855e-7■■■□□ 15.2
UPF1Q92900 C2orf82-204ENST00000448993 357 ntAPPRIS ALT2 TSL 519.63■□□□□ 0.738e-8■■■□□ 15.2
UPF1Q92900 CDK12-205ENST00000559663 871 ntTSL 512.59□□□□□ -0.392e-9■■■□□ 15.2
UPF1Q92900 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.282e-9■■■□□ 15.2
UPF1Q92900 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.3□□□□□ -1.48e-8■■■□□ 15.2
UPF1Q92900 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC9.09□□□□□ -0.953e-9■■■□□ 15.2
UPF1Q92900 HIRA-203ENST00000452818 453 ntTSL 516.91■□□□□ 0.36e-8■■■□□ 15.2
UPF1Q92900 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.793e-6■■■□□ 15.2
UPF1Q92900 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC23.26■■□□□ 1.313e-6■■■□□ 15.2
UPF1Q92900 UBE2G2-211ENST00000497630 933 ntTSL 228.28■■■□□ 2.124e-7■■■□□ 15.2
UPF1Q92900 UBE2G2-204ENST00000477954 1034 ntTSL 323.89■■□□□ 1.414e-7■■■□□ 15.2
UPF1Q92900 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.221e-6■■■□□ 15.2
UPF1Q92900 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.171e-6■■■□□ 15.2
UPF1Q92900 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC20.64■□□□□ 0.891e-6■■■□□ 15.2
UPF1Q92900 ISY1-205ENST00000471497 1211 ntTSL 1 (best)20.38■□□□□ 0.851e-6■■■□□ 15.2
UPF1Q92900 AMPD2-203ENST00000358729 2838 ntTSL 2 BASIC12.38□□□□□ -0.432e-6■■■□□ 15.2
UPF1Q92900 SRFBP1-202ENST00000504881 567 ntTSL 312.02□□□□□ -0.495e-6■■■□□ 15.1
UPF1Q92900 SBF1-205ENST00000470434 2139 ntTSL 521.97■■□□□ 1.114e-6■■■□□ 15.1
UPF1Q92900 SBF1-204ENST00000418590 1578 ntTSL 1 (best)21.08■□□□□ 0.974e-6■■■□□ 15.1
UPF1Q92900 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 04e-6■■■□□ 15.1
UPF1Q92900 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC23.09■■□□□ 1.296e-7■■■□□ 15.1
UPF1Q92900 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.52■□□□□ 0.716e-7■■■□□ 15.1
UPF1Q92900 ZNF589-202ENST00000412564 593 ntTSL 1 (best) BASIC17.24■□□□□ 0.356e-7■■■□□ 15.1
UPF1Q92900 ZNF589-207ENST00000457782 3658 ntTSL 211.9□□□□□ -0.56e-7■■■□□ 15.1
UPF1Q92900 ZNF589-201ENST00000354698 3368 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.716e-7■■■□□ 15.1
Retrieved 100 of 15,879 protein–RNA pairs in 121.1 ms