Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PPP4R4Q6NUP7 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
PPP4R4Q6NUP7 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
PPP4R4Q6NUP7 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
PPP4R4Q6NUP7 AC012317.2-201ENST00000623305 2251 ntBASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 HTR7P1-201ENST00000538670 1336 ntBASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
PPP4R4Q6NUP7 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 KRT16P5-201ENST00000455284 522 ntBASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PPP4R4Q6NUP7 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 AC135776.1-201ENST00000319817 2481 ntBASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 AP002982.1-201ENST00000492365 877 ntBASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.59■□□□□ 0.41
PPP4R4Q6NUP7 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.58■□□□□ 0.41
PPP4R4Q6NUP7 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.58■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms