Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.43■□□□□ 0.38
LIM2P55344 MIR3917-201ENST00000580971 93 ntBASIC17.43■□□□□ 0.38
LIM2P55344 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.43■□□□□ 0.38
LIM2P55344 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.43■□□□□ 0.38
LIM2P55344 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
LIM2P55344 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.43■□□□□ 0.38
LIM2P55344 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.43■□□□□ 0.38
LIM2P55344 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
LIM2P55344 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIM2P55344 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIM2P55344 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.42■□□□□ 0.38
LIM2P55344 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIM2P55344 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIM2P55344 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
LIM2P55344 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIM2P55344 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
LIM2P55344 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.42■□□□□ 0.38
LIM2P55344 MIR149-201ENST00000384879 89 ntBASIC17.42■□□□□ 0.38
LIM2P55344 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
LIM2P55344 TSPY5P-201ENST00000426936 936 ntBASIC17.42■□□□□ 0.38
LIM2P55344 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.42■□□□□ 0.38
LIM2P55344 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.42■□□□□ 0.38
LIM2P55344 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
LIM2P55344 AC009065.1-201ENST00000564055 1225 ntBASIC17.42■□□□□ 0.38
LIM2P55344 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIM2P55344 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.42■□□□□ 0.38
LIM2P55344 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.42■□□□□ 0.38
LIM2P55344 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
LIM2P55344 AL157888.1-201ENST00000631930 593 ntBASIC17.42■□□□□ 0.38
LIM2P55344 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIM2P55344 AC009102.3-201ENST00000623118 1491 ntBASIC17.42■□□□□ 0.38
LIM2P55344 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIM2P55344 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.42■□□□□ 0.38
LIM2P55344 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIM2P55344 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIM2P55344 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIM2P55344 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIM2P55344 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIM2P55344 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIM2P55344 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIM2P55344 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.42■□□□□ 0.38
LIM2P55344 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.41■□□□□ 0.38
LIM2P55344 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.41■□□□□ 0.38
LIM2P55344 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.41■□□□□ 0.38
LIM2P55344 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
LIM2P55344 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.41■□□□□ 0.38
LIM2P55344 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
LIM2P55344 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 AC034232.1-201ENST00000506026 1064 ntBASIC17.41■□□□□ 0.38
LIM2P55344 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.41■□□□□ 0.38
LIM2P55344 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
LIM2P55344 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
LIM2P55344 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.41■□□□□ 0.38
LIM2P55344 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.41■□□□□ 0.38
LIM2P55344 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
LIM2P55344 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.41■□□□□ 0.38
LIM2P55344 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
LIM2P55344 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIM2P55344 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIM2P55344 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LIM2P55344 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIM2P55344 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIM2P55344 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIM2P55344 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
LIM2P55344 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIM2P55344 SDHAP2-201ENST00000455183 2001 ntBASIC17.4■□□□□ 0.38
LIM2P55344 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.4■□□□□ 0.38
LIM2P55344 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.4■□□□□ 0.38
LIM2P55344 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
LIM2P55344 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIM2P55344 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIM2P55344 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIM2P55344 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIM2P55344 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.4■□□□□ 0.38
LIM2P55344 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIM2P55344 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms