Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.26■□□□□ 0.35
RFX3P48380 AC087499.1-201ENST00000418141 1075 ntBASIC17.26■□□□□ 0.35
RFX3P48380 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.26■□□□□ 0.35
RFX3P48380 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.26■□□□□ 0.35
RFX3P48380 EGLN1P1-201ENST00000531623 762 ntBASIC17.26■□□□□ 0.35
RFX3P48380 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.26■□□□□ 0.35
RFX3P48380 AL023803.3-201ENST00000615559 522 ntBASIC17.26■□□□□ 0.35
RFX3P48380 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.26■□□□□ 0.35
RFX3P48380 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.26■□□□□ 0.35
RFX3P48380 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
RFX3P48380 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RFX3P48380 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFX3P48380 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFX3P48380 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
RFX3P48380 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFX3P48380 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.25■□□□□ 0.35
RFX3P48380 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.25■□□□□ 0.35
RFX3P48380 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFX3P48380 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RFX3P48380 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFX3P48380 AC092338.2-201ENST00000568827 1415 ntBASIC17.25■□□□□ 0.35
RFX3P48380 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFX3P48380 TSPY14P-201ENST00000303979 915 ntBASIC17.25■□□□□ 0.35
RFX3P48380 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.25■□□□□ 0.35
RFX3P48380 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.25■□□□□ 0.35
RFX3P48380 MIR3180-5-201ENST00000583743 153 ntBASIC17.25■□□□□ 0.35
RFX3P48380 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFX3P48380 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFX3P48380 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.25■□□□□ 0.35
RFX3P48380 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.25■□□□□ 0.35
RFX3P48380 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFX3P48380 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFX3P48380 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RFX3P48380 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RFX3P48380 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.25■□□□□ 0.35
RFX3P48380 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RFX3P48380 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
RFX3P48380 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RFX3P48380 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
RFX3P48380 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.24■□□□□ 0.35
RFX3P48380 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.24■□□□□ 0.35
RFX3P48380 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.24■□□□□ 0.35
RFX3P48380 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.24■□□□□ 0.35
RFX3P48380 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.24■□□□□ 0.35
RFX3P48380 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 AC133561.5-201ENST00000635547 218 ntBASIC17.24■□□□□ 0.35
RFX3P48380 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
RFX3P48380 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.24■□□□□ 0.35
RFX3P48380 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.24■□□□□ 0.35
RFX3P48380 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RFX3P48380 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.24■□□□□ 0.35
RFX3P48380 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RFX3P48380 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.23■□□□□ 0.35
RFX3P48380 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
RFX3P48380 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFX3P48380 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
RFX3P48380 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFX3P48380 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
RFX3P48380 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
RFX3P48380 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFX3P48380 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
RFX3P48380 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFX3P48380 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RFX3P48380 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.23■□□□□ 0.35
RFX3P48380 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.23■□□□□ 0.35
RFX3P48380 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RFX3P48380 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RFX3P48380 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms