Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
PTPN9P43378 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.06■□□□□ 0.64
PTPN9P43378 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.06■□□□□ 0.64
PTPN9P43378 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.06■□□□□ 0.64
PTPN9P43378 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.06■□□□□ 0.64
PTPN9P43378 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN9P43378 AC008687.5-201ENST00000593746 558 ntBASIC19.06■□□□□ 0.64
PTPN9P43378 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.06■□□□□ 0.64
PTPN9P43378 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
PTPN9P43378 AC079602.3-201ENST00000623931 403 ntBASIC19.06■□□□□ 0.64
PTPN9P43378 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
PTPN9P43378 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
PTPN9P43378 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN9P43378 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN9P43378 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN9P43378 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN9P43378 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN9P43378 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
PTPN9P43378 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
PTPN9P43378 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.06■□□□□ 0.64
PTPN9P43378 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN9P43378 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.06■□□□□ 0.64
PTPN9P43378 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTPN9P43378 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN9P43378 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.05■□□□□ 0.64
PTPN9P43378 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
PTPN9P43378 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN9P43378 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN9P43378 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN9P43378 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN9P43378 AL096828.2-201ENST00000567259 1965 ntBASIC19.05■□□□□ 0.64
PTPN9P43378 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN9P43378 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN9P43378 AC093010.1-201ENST00000473625 1624 ntBASIC19.05■□□□□ 0.64
PTPN9P43378 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN9P43378 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN9P43378 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN9P43378 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.05■□□□□ 0.64
PTPN9P43378 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
PTPN9P43378 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN9P43378 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.05■□□□□ 0.64
PTPN9P43378 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN9P43378 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTPN9P43378 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.05■□□□□ 0.64
PTPN9P43378 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.04■□□□□ 0.64
PTPN9P43378 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 AL391807.1-203ENST00000604392 2365 ntBASIC19.04■□□□□ 0.64
PTPN9P43378 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.04■□□□□ 0.64
PTPN9P43378 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
PTPN9P43378 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.04■□□□□ 0.64
PTPN9P43378 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 TMPOP1-202ENST00000424642 1267 ntBASIC19.04■□□□□ 0.64
PTPN9P43378 HLA-F-220ENST00000434407 884 ntBASIC19.04■□□□□ 0.64
PTPN9P43378 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 AC063952.2-201ENST00000498792 1227 ntBASIC19.04■□□□□ 0.64
PTPN9P43378 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.04■□□□□ 0.64
PTPN9P43378 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.04■□□□□ 0.64
PTPN9P43378 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.04■□□□□ 0.64
PTPN9P43378 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.04■□□□□ 0.64
PTPN9P43378 AL136038.4-201ENST00000603606 1261 ntBASIC19.04■□□□□ 0.64
PTPN9P43378 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.04■□□□□ 0.64
PTPN9P43378 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.04■□□□□ 0.64
PTPN9P43378 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
PTPN9P43378 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTPN9P43378 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.04■□□□□ 0.64
PTPN9P43378 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
PTPN9P43378 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.03■□□□□ 0.64
PTPN9P43378 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.03■□□□□ 0.64
PTPN9P43378 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
PTPN9P43378 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.03■□□□□ 0.64
PTPN9P43378 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 KRT18P38-201ENST00000449496 1282 ntBASIC19.03■□□□□ 0.64
PTPN9P43378 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.03■□□□□ 0.64
PTPN9P43378 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTPN9P43378 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.03■□□□□ 0.64
PTPN9P43378 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms