Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HNF4AP41235 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HNF4AP41235 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HNF4AP41235 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
HNF4AP41235 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
HNF4AP41235 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
HNF4AP41235 AC007613.1-201ENST00000572811 2597 ntBASIC17.79■□□□□ 0.44
HNF4AP41235 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.79■□□□□ 0.44
HNF4AP41235 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.79■□□□□ 0.44
HNF4AP41235 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.79■□□□□ 0.44
HNF4AP41235 SLC25A3P1-201ENST00000443844 931 ntBASIC17.79■□□□□ 0.44
HNF4AP41235 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.79■□□□□ 0.44
HNF4AP41235 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
HNF4AP41235 LINC01023-201ENST00000606054 436 ntBASIC17.79■□□□□ 0.44
HNF4AP41235 AC005363.2-201ENST00000618631 242 ntBASIC17.79■□□□□ 0.44
HNF4AP41235 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.79■□□□□ 0.44
HNF4AP41235 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC17.79■□□□□ 0.44
HNF4AP41235 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
HNF4AP41235 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
HNF4AP41235 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
HNF4AP41235 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.79■□□□□ 0.44
HNF4AP41235 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.79■□□□□ 0.44
HNF4AP41235 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
HNF4AP41235 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HNF4AP41235 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
HNF4AP41235 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
HNF4AP41235 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
HNF4AP41235 AL163051.1-201ENST00000569214 1512 ntBASIC17.78■□□□□ 0.44
HNF4AP41235 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
HNF4AP41235 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
HNF4AP41235 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.78■□□□□ 0.44
HNF4AP41235 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.78■□□□□ 0.44
HNF4AP41235 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.78■□□□□ 0.44
HNF4AP41235 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
HNF4AP41235 LIN28AP1-201ENST00000429574 405 ntBASIC17.78■□□□□ 0.44
HNF4AP41235 ATP5G1P1-201ENST00000448724 379 ntBASIC17.78■□□□□ 0.44
HNF4AP41235 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.78■□□□□ 0.44
HNF4AP41235 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.78■□□□□ 0.44
HNF4AP41235 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 AC009065.1-201ENST00000564055 1225 ntBASIC17.78■□□□□ 0.44
HNF4AP41235 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.78■□□□□ 0.44
HNF4AP41235 AL512604.3-201ENST00000569583 964 ntBASIC17.78■□□□□ 0.44
HNF4AP41235 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.78■□□□□ 0.44
HNF4AP41235 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.78■□□□□ 0.44
HNF4AP41235 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.78■□□□□ 0.44
HNF4AP41235 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.78■□□□□ 0.44
HNF4AP41235 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 AC012306.2-201ENST00000609350 630 ntBASIC17.78■□□□□ 0.44
HNF4AP41235 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.78■□□□□ 0.44
HNF4AP41235 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
HNF4AP41235 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
HNF4AP41235 AC097493.4-201ENST00000641197 219 ntBASIC17.78■□□□□ 0.44
HNF4AP41235 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
HNF4AP41235 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
HNF4AP41235 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.78■□□□□ 0.44
HNF4AP41235 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
HNF4AP41235 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
HNF4AP41235 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
HNF4AP41235 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HNF4AP41235 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.77■□□□□ 0.44
HNF4AP41235 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.77■□□□□ 0.44
HNF4AP41235 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HNF4AP41235 LTB4R2-202ENST00000528054 3092 ntBASIC17.77■□□□□ 0.44
HNF4AP41235 AC005332.8-201ENST00000622750 2735 ntBASIC17.77■□□□□ 0.44
HNF4AP41235 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
HNF4AP41235 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
HNF4AP41235 MIR149-201ENST00000384879 89 ntBASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms