Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
HOXC12P31275 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.3■□□□□ 0.2
HOXC12P31275 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.3■□□□□ 0.2
HOXC12P31275 ZNF444P1-201ENST00000559497 298 ntBASIC16.3■□□□□ 0.2
HOXC12P31275 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.3■□□□□ 0.2
HOXC12P31275 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.3■□□□□ 0.2
HOXC12P31275 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
HOXC12P31275 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HOXC12P31275 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC12P31275 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC12P31275 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC12P31275 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HOXC12P31275 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.3■□□□□ 0.2
HOXC12P31275 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC16.3■□□□□ 0.2
HOXC12P31275 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC12P31275 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC12P31275 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC12P31275 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HOXC12P31275 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXC12P31275 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HOXC12P31275 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.29■□□□□ 0.2
HOXC12P31275 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXC12P31275 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.29■□□□□ 0.2
HOXC12P31275 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXC12P31275 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HOXC12P31275 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
HOXC12P31275 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HOXC12P31275 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXC12P31275 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXC12P31275 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HOXC12P31275 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXC12P31275 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC12P31275 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
HOXC12P31275 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC12P31275 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC12P31275 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC12P31275 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC12P31275 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC12P31275 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC12P31275 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXC12P31275 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXC12P31275 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.28■□□□□ 0.2
HOXC12P31275 AC112907.2-201ENST00000448639 330 ntBASIC16.28■□□□□ 0.2
HOXC12P31275 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.28■□□□□ 0.2
HOXC12P31275 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC16.28■□□□□ 0.2
HOXC12P31275 GCSHP2-201ENST00000560971 527 ntBASIC16.28■□□□□ 0.2
HOXC12P31275 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
HOXC12P31275 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.28■□□□□ 0.2
HOXC12P31275 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC12P31275 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC12P31275 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HOXC12P31275 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC12P31275 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC12P31275 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC12P31275 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HOXC12P31275 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC12P31275 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC12P31275 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC16.28■□□□□ 0.2
HOXC12P31275 HOXB1-202ENST00000577092 1414 ntBASIC16.28■□□□□ 0.2
HOXC12P31275 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXC12P31275 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC12P31275 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC12P31275 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC16.27■□□□□ 0.2
HOXC12P31275 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC12P31275 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXC12P31275 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC12P31275 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
HOXC12P31275 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC12P31275 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC12P31275 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC12P31275 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC12P31275 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC12P31275 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC12P31275 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC12P31275 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
HOXC12P31275 AC246785.2-201ENST00000432512 513 ntBASIC16.27■□□□□ 0.2
HOXC12P31275 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC12P31275 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXC12P31275 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.27■□□□□ 0.2
HOXC12P31275 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.2
HOXC12P31275 AC083849.1-201ENST00000615227 514 ntBASIC16.27■□□□□ 0.2
HOXC12P31275 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
HOXC12P31275 Z98044.1-201ENST00000632503 1764 ntBASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms