Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
SDCBPO00560 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
SDCBPO00560 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
SDCBPO00560 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC15.64■□□□□ 0.09
SDCBPO00560 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC15.64■□□□□ 0.09
SDCBPO00560 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC15.64■□□□□ 0.09
SDCBPO00560 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC15.64■□□□□ 0.09
SDCBPO00560 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC15.64■□□□□ 0.09
SDCBPO00560 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
SDCBPO00560 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC15.64■□□□□ 0.09
SDCBPO00560 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC15.64■□□□□ 0.09
SDCBPO00560 AC073195.1-201ENST00000607241 877 ntBASIC15.64■□□□□ 0.09
SDCBPO00560 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.64■□□□□ 0.09
SDCBPO00560 AL031985.4-201ENST00000642138 673 ntBASIC15.64■□□□□ 0.09
SDCBPO00560 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
SDCBPO00560 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC15.64■□□□□ 0.09
SDCBPO00560 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
SDCBPO00560 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SDCBPO00560 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SDCBPO00560 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
SDCBPO00560 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
SDCBPO00560 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC15.64■□□□□ 0.09
SDCBPO00560 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC15.63■□□□□ 0.09
SDCBPO00560 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC15.63■□□□□ 0.09
SDCBPO00560 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
SDCBPO00560 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC15.63■□□□□ 0.09
SDCBPO00560 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC15.63■□□□□ 0.09
SDCBPO00560 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC15.63■□□□□ 0.09
SDCBPO00560 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 AC106820.2-201ENST00000563775 3264 ntBASIC15.63■□□□□ 0.09
SDCBPO00560 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
SDCBPO00560 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
SDCBPO00560 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
SDCBPO00560 AC004951.3-201ENST00000418645 1148 ntBASIC15.63■□□□□ 0.09
SDCBPO00560 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC15.63■□□□□ 0.09
SDCBPO00560 PRSS44-201ENST00000515154 1146 ntBASIC15.63■□□□□ 0.09
SDCBPO00560 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC15.63■□□□□ 0.09
SDCBPO00560 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 AC142381.4-202ENST00000563973 229 ntBASIC15.63■□□□□ 0.09
SDCBPO00560 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.63■□□□□ 0.09
SDCBPO00560 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC15.63■□□□□ 0.09
SDCBPO00560 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC15.63■□□□□ 0.09
SDCBPO00560 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
SDCBPO00560 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC15.63■□□□□ 0.09
SDCBPO00560 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 FLYWCH1P1-201ENST00000460917 1874 ntBASIC15.63■□□□□ 0.09
SDCBPO00560 AC093677.2-201ENST00000600169 1863 ntBASIC15.63■□□□□ 0.09
SDCBPO00560 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC15.63■□□□□ 0.09
SDCBPO00560 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.63■□□□□ 0.09
SDCBPO00560 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SDCBPO00560 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SDCBPO00560 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SDCBPO00560 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SDCBPO00560 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SDCBPO00560 REXO1L9P-201ENST00000604264 2108 ntBASIC15.62■□□□□ 0.09
SDCBPO00560 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SDCBPO00560 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SDCBPO00560 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.62■□□□□ 0.09
SDCBPO00560 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SDCBPO00560 KRT8P11-201ENST00000409686 1436 ntBASIC15.62■□□□□ 0.09
SDCBPO00560 AL135905.2-201ENST00000584934 1404 ntBASIC15.62■□□□□ 0.09
SDCBPO00560 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SDCBPO00560 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
SDCBPO00560 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
SDCBPO00560 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC15.62■□□□□ 0.09
SDCBPO00560 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC15.62■□□□□ 0.09
SDCBPO00560 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SDCBPO00560 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SDCBPO00560 PRORSD1P-201ENST00000295112 541 ntBASIC15.62■□□□□ 0.09
SDCBPO00560 PEX7-202ENST00000367756 680 ntTSL 3 BASIC15.62■□□□□ 0.09
SDCBPO00560 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC15.62■□□□□ 0.09
SDCBPO00560 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SDCBPO00560 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms