Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
NOTCH3Q9UM47 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 BUB3-202ENST00000368859 667 ntTSL 3 BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 AC079781.3-201ENST00000449110 356 ntBASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 TSSC2-201ENST00000450217 709 ntBASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 AC106795.1-205ENST00000512851 1056 ntBASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 AC091304.2-201ENST00000564639 760 ntBASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
NOTCH3Q9UM47 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 Z83836.1-201ENST00000624605 1642 ntBASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 TP73-202ENST00000354437 2140 ntTSL 5 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 HLA-A-201ENST00000376802 1334 ntBASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 OR6D1P-202ENST00000641007 5290 ntBASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 TSPY12P-201ENST00000421279 868 ntBASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 MIR3917-201ENST00000580971 93 ntBASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
NOTCH3Q9UM47 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
NOTCH3Q9UM47 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms