Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 MESTP1-201ENST00000404287 994 ntBASIC18.15■□□□□ 0.5
MKS1Q9NXB0 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 CR392000.1-201ENST00000624770 1228 ntBASIC18.15■□□□□ 0.5
MKS1Q9NXB0 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
MKS1Q9NXB0 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.14■□□□□ 0.5
MKS1Q9NXB0 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.14■□□□□ 0.5
MKS1Q9NXB0 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
MKS1Q9NXB0 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.14■□□□□ 0.49
MKS1Q9NXB0 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 AC036111.1-201ENST00000533973 1582 ntBASIC18.14■□□□□ 0.49
MKS1Q9NXB0 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 MIR3180-5-201ENST00000583743 153 ntBASIC18.14■□□□□ 0.49
MKS1Q9NXB0 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
MKS1Q9NXB0 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 AC141586.5-201ENST00000624546 2050 ntBASIC18.13■□□□□ 0.49
MKS1Q9NXB0 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 AL355802.2-201ENST00000402069 882 ntBASIC18.13■□□□□ 0.49
MKS1Q9NXB0 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 AC073195.1-201ENST00000607241 877 ntBASIC18.13■□□□□ 0.49
MKS1Q9NXB0 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 FZD10-202ENST00000539839 3282 ntBASIC18.13■□□□□ 0.49
MKS1Q9NXB0 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
MKS1Q9NXB0 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
MKS1Q9NXB0 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms