Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 IGHV3-42-201ENST00000520410 361 ntBASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 AC004817.3-201ENST00000602957 2129 ntBASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 PLK5-205ENST00000642079 1969 ntBASIC18.5■□□□□ 0.55
COL25A1Q9BXS0 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 TREML5P-201ENST00000421694 576 ntBASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 IGHV3-65-201ENST00000523210 341 ntBASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 SMG8-203ENST00000578922 2178 ntBASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL25A1Q9BXS0 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 MIR6805-201ENST00000615055 62 ntBASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 AC244015.2-201ENST00000616358 1861 ntBASIC18.48■□□□□ 0.55
COL25A1Q9BXS0 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 TDG-209ENST00000544861 1387 ntTSL 2 BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 BCYRN1-201ENST00000418539 200 ntBASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
COL25A1Q9BXS0 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms