Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 NECAP1-208ENST00000545807 3113 ntTSL 57.25□□□□□ -1.254e-7■■■□□ 15.7
UPF1Q92900 NECAP1-222ENST00000640072 3456 ntTSL 56.31□□□□□ -1.44e-7■■■□□ 15.7
UPF1Q92900 LUZP1-201ENST00000302291 8898 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.491e-9■■■□□ 15.7
UPF1Q92900 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC10.43□□□□□ -0.741e-9■■■□□ 15.7
UPF1Q92900 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.31e-9■■■□□ 15.7
UPF1Q92900 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC26.79■■□□□ 1.882e-28■■■□□ 15.7
UPF1Q92900 CKS1B-206ENST00000474215 739 ntTSL 315.86■□□□□ 0.132e-28■■■□□ 15.7
UPF1Q92900 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.82e-28■■■□□ 15.7
UPF1Q92900 CKS1B-207ENST00000477676 602 ntTSL 310.07□□□□□ -0.82e-28■■■□□ 15.7
UPF1Q92900 GAMT-205ENST00000640762 751 ntTSL 5 BASIC30.46■■■□□ 2.479e-7■■■□□ 15.7
UPF1Q92900 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.412e-6■■■□□ 15.6
UPF1Q92900 EGLN3-208ENST00000551935 575 ntTSL 422.11■■□□□ 1.132e-6■■■□□ 15.6
UPF1Q92900 RPL27A-201ENST00000314138 4916 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.343e-10■■■□□ 15.6
UPF1Q92900 ATXN7L3-205ENST00000587097 1341 ntTSL 543.87■■■■■ 4.614e-12■■■□□ 15.6
UPF1Q92900 USP24-201ENST00000294383 10549 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.471e-8■■■□□ 15.6
UPF1Q92900 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC23.4■■□□□ 1.341e-26■■■□□ 15.6
UPF1Q92900 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC21.89■■□□□ 1.091e-26■■■□□ 15.6
UPF1Q92900 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC22.62■■□□□ 1.216e-7■■■□□ 15.6
UPF1Q92900 RAB17-209ENST00000466244 937 ntTSL 220.64■□□□□ 0.896e-7■■■□□ 15.6
UPF1Q92900 IRAK2-201ENST00000256458 3483 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.566e-12■■■□□ 15.6
UPF1Q92900 IST1-225ENST00000568581 503 ntTSL 523.24■■□□□ 1.313e-6■■■□□ 15.6
UPF1Q92900 ATXN1L-203ENST00000569119 428 ntTSL 523.18■■□□□ 1.33e-6■■■□□ 15.6
UPF1Q92900 ATXN1L-201ENST00000427980 7886 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.73e-6■■■□□ 15.6
UPF1Q92900 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.522e-6■■■□□ 15.6
UPF1Q92900 MCUR1-203ENST00000607303 622 ntTSL 311.77□□□□□ -0.532e-6■■■□□ 15.6
UPF1Q92900 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC22.33■■□□□ 1.173e-7■■■□□ 15.6
UPF1Q92900 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC18.83■□□□□ 0.64e-9■■■□□ 15.6
UPF1Q92900 THRAP3-201ENST00000354618 4432 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.549e-7■■■□□ 15.6
UPF1Q92900 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC8.11□□□□□ -1.115e-9■■■□□ 15.6
UPF1Q92900 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.9□□□□□ -1.475e-9■■■□□ 15.6
UPF1Q92900 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.212e-6■■■□□ 15.6
UPF1Q92900 YIPF4-201ENST00000238831 11949 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.047e-9■■■□□ 15.6
UPF1Q92900 MAP4-203ENST00000383736 2282 ntTSL 511.11□□□□□ -0.632e-8■■■□□ 15.6
UPF1Q92900 UCP2-208ENST00000544615 1004 ntTSL 216.2■□□□□ 0.181e-10■■■□□ 15.6
UPF1Q92900 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.132e-7■■■□□ 15.6
UPF1Q92900 CDK6-201ENST00000265734 11612 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.782e-8■■■□□ 15.6
UPF1Q92900 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.73□□□□□ -1.651e-8■■■□□ 15.5
UPF1Q92900 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.61e-10■■■□□ 15.5
UPF1Q92900 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC23.78■■□□□ 1.41e-10■■■□□ 15.5
UPF1Q92900 UBE2E1-203ENST00000424381 1224 ntTSL 2 BASIC13.26□□□□□ -0.291e-10■■■□□ 15.5
UPF1Q92900 UBE2E1-205ENST00000452012 1166 ntTSL 313.26□□□□□ -0.291e-10■■■□□ 15.5
UPF1Q92900 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.987e-8■■■□□ 15.5
UPF1Q92900 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.811e-8■■■□□ 15.5
UPF1Q92900 UBAC1-202ENST00000465873 882 ntTSL 223.24■■□□□ 1.311e-8■■■□□ 15.5
UPF1Q92900 ISY1-207ENST00000496163 752 ntTSL 317.77■□□□□ 0.443e-6■■■□□ 15.5
UPF1Q92900 UBAC1-206ENST00000489050 864 ntTSL 315.54■□□□□ 0.081e-8■■■□□ 15.5
UPF1Q92900 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.241e-6■■■□□ 15.5
UPF1Q92900 CHERP-203ENST00000546361 4173 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.445e-7■■■□□ 15.5
UPF1Q92900 CHERP-201ENST00000198939 4084 ntTSL 5 BASIC12□□□□□ -0.495e-7■■■□□ 15.5
UPF1Q92900 PLD1-208ENST00000463281 694 ntTSL 413.28□□□□□ -0.283e-6■■■□□ 15.5
UPF1Q92900 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC7.41□□□□□ -1.223e-6■■■□□ 15.5
UPF1Q92900 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.53e-6■■■□□ 15.5
UPF1Q92900 RPS10-NUDT3-203ENST00000639877 2911 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.388e-9■■■□□ 15.5
UPF1Q92900 ELOVL2-201ENST00000354666 3997 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.671e-8■■■□□ 15.5
UPF1Q92900 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.063e-7■■■□□ 15.5
UPF1Q92900 AHSG-202ENST00000411641 1711 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.259e-18■■■□□ 15.5
UPF1Q92900 AHSG-201ENST00000273784 1553 ntAPPRIS ALT2 TSL 3 BASIC12.4□□□□□ -0.429e-18■■■□□ 15.5
UPF1Q92900 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.062e-6■■■□□ 15.5
UPF1Q92900 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.98□□□□□ -1.292e-6■■■□□ 15.5
UPF1Q92900 NCBP1-202ENST00000375147 5178 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.284e-12■■■□□ 15.5
UPF1Q92900 NCBP1-204ENST00000491445 300 ntTSL 311.66□□□□□ -0.544e-12■■■□□ 15.5
UPF1Q92900 CYGB-204ENST00000589342 815 ntTSL 3 BASIC26.17■■□□□ 1.783e-8■■■□□ 15.5
UPF1Q92900 CYGB-205ENST00000590175 830 ntTSL 3 BASIC24■■□□□ 1.433e-8■■■□□ 15.5
UPF1Q92900 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.143e-8■■■□□ 15.5
UPF1Q92900 CYGB-203ENST00000589145 788 ntTSL 3 BASIC21.04■□□□□ 0.963e-8■■■□□ 15.5
UPF1Q92900 MIEF1-205ENST00000433117 3838 ntTSL 1 (best)11.92□□□□□ -0.58e-8■■■□□ 15.5
UPF1Q92900 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.92e-6■■■□□ 15.5
UPF1Q92900 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.192e-6■■■□□ 15.5
UPF1Q92900 MYO1C-201ENST00000359786 5145 ntTSL 1 (best) BASIC12.94□□□□□ -0.342e-6■■■□□ 15.5
UPF1Q92900 MYO1C-202ENST00000361007 4734 ntAPPRIS P3 TSL 5 BASIC12.88□□□□□ -0.352e-6■■■□□ 15.5
UPF1Q92900 LGALS3BP-207ENST00000587311 1905 ntTSL 220.8■□□□□ 0.922e-6■■■□□ 15.5
UPF1Q92900 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC19.04■□□□□ 0.642e-6■■■□□ 15.5
UPF1Q92900 LGALS3BP-204ENST00000586720 1736 ntTSL 518.86■□□□□ 0.612e-6■■■□□ 15.5
UPF1Q92900 LGALS3BP-205ENST00000587251 2091 ntTSL 517.91■□□□□ 0.462e-6■■■□□ 15.5
UPF1Q92900 LGALS3BP-201ENST00000262776 2405 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.092e-6■■■□□ 15.5
UPF1Q92900 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.444e-7■■■□□ 15.4
UPF1Q92900 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.664e-7■■■□□ 15.4
UPF1Q92900 SPEN-202ENST00000438066 1733 ntTSL 310.72□□□□□ -0.694e-7■■■□□ 15.4
UPF1Q92900 SPEN-204ENST00000471538 1404 ntTSL 28.38□□□□□ -1.074e-7■■■□□ 15.4
UPF1Q92900 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.118e-7■■■□□ 15.4
UPF1Q92900 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.98■□□□□ 0.794e-9■■■□□ 15.4
UPF1Q92900 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.494e-9■■■□□ 15.4
UPF1Q92900 SLC29A2-204ENST00000541567 2272 ntTSL 1 (best)18.03■□□□□ 0.484e-9■■■□□ 15.4
UPF1Q92900 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.86■□□□□ 0.454e-9■■■□□ 15.4
UPF1Q92900 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.454e-9■■■□□ 15.4
UPF1Q92900 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.454e-9■■■□□ 15.4
UPF1Q92900 SLC29A2-203ENST00000540386 2474 ntTSL 1 (best)17.04■□□□□ 0.324e-9■■■□□ 15.4
UPF1Q92900 MED8-201ENST00000290663 1483 ntTSL 5 BASIC16.83■□□□□ 0.288e-9■■■□□ 15.4
UPF1Q92900 MED8-203ENST00000372457 1924 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.438e-9■■■□□ 15.4
UPF1Q92900 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC38.37■■■■□ 3.738e-29■■■□□ 15.4
UPF1Q92900 HMG20A-202ENST00000381714 4112 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.194e-7■■■□□ 15.4
UPF1Q92900 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.354e-7■■■□□ 15.4
UPF1Q92900 HMG20A-204ENST00000558288 3558 nt6.23□□□□□ -1.414e-7■■■□□ 15.4
UPF1Q92900 MVD-202ENST00000561895 499 ntTSL 216.36■□□□□ 0.217e-10■■■□□ 15.4
UPF1Q92900 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.91e-7■■■□□ 15.4
UPF1Q92900 PXN-203ENST00000323871 5457 ntTSL 217.91■□□□□ 0.461e-6■■■□□ 15.4
UPF1Q92900 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.191e-6■■■□□ 15.4
UPF1Q92900 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.051e-6■■■□□ 15.4
UPF1Q92900 PXN-222ENST00000637624 4132 ntTSL 212.97□□□□□ -0.331e-6■■■□□ 15.4
UPF1Q92900 PXN-204ENST00000424649 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.471e-6■■■□□ 15.4
Retrieved 100 of 15,879 protein–RNA pairs in 114.5 ms