RNA–Protein interactions for RNA: ENST00000545807.6

NECAP1-208, Transcript of NECAP endocytosis associated 1, humanhuman

TSL 5

Gene NECAP1, Length 3,113 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAP1-208ENST00000545807 NISCHQ9Y2I1 1504 aa13.7□□□□□ -0.22
NECAP1-208ENST00000545807 PELP1Q8IZL8 1130 aaKnown RBP11.98□□□□□ -0.49
NECAP1-208ENST00000545807 DCAF8L2P0C7V8 631 aa11.91□□□□□ -0.5
NECAP1-208ENST00000545807 MYT1Q01538 1121 aa11.79□□□□□ -0.52
NECAP1-208ENST00000545807 SHROOM4Q9ULL8 1493 aa11.73□□□□□ -0.53
NECAP1-208ENST00000545807 CCDC180Q9P1Z9 1646 aa11.69□□□□□ -0.54
NECAP1-208ENST00000545807 ABCC9O60706 1549 aa11.48□□□□□ -0.57
NECAP1-208ENST00000545807 ZCCHC6Q5VYS8 1495 aaKnown RBP11.47□□□□□ -0.57
NECAP1-208ENST00000545807 TTBK1Q5TCY1 1321 aaPredicted RBP11.38□□□□□ -0.59
NECAP1-208ENST00000545807 SUPT5HO00267 1087 aaKnown RBP11.34□□□□□ -0.59
NECAP1-208ENST00000545807 HRCP23327 699 aa11.14□□□□□ -0.63
NECAP1-208ENST00000545807 SCRIBQ14160 1630 aa11.12□□□□□ -0.63
NECAP1-208ENST00000545807 DCAF1Q9Y4B6 1507 aa11.09□□□□□ -0.63
NECAP1-208ENST00000545807 PRKCSHP14314 528 aaPredicted RBP11.01□□□□□ -0.65
NECAP1-208ENST00000545807 PABPN1Q86U42 306 aaKnown RBP eCLIP11□□□□□ -0.65
NECAP1-208ENST00000545807 NACADO15069 1562 aa10.97□□□□□ -0.65
NECAP1-208ENST00000545807 AEBP2Q6ZN18 517 aaPredicted RBP10.94□□□□□ -0.66
NECAP1-208ENST00000545807 RB1CC1Q8TDY2 1594 aa10.92□□□□□ -0.66
NECAP1-208ENST00000545807 SCAF1Q9H7N4 1312 aaKnown RBP10.9□□□□□ -0.66
NECAP1-208ENST00000545807 MYO15BQ96JP2 1530 aa10.88□□□□□ -0.67
NECAP1-208ENST00000545807 APLP2Q06481 763 aa10.83□□□□□ -0.68
NECAP1-208ENST00000545807 CECR2Q9BXF3 1484 aa10.82□□□□□ -0.68
NECAP1-208ENST00000545807 ERICH6Q7L0X2 663 aa10.78□□□□□ -0.68
NECAP1-208ENST00000545807 BCL11AQ9H165 835 aa10.77□□□□□ -0.69
NECAP1-208ENST00000545807 RSF1Q96T23 1441 aaPredicted RBP10.74□□□□□ -0.69
NECAP1-208ENST00000545807 UNC13AQ9UPW8 1703 aa10.7□□□□□ -0.7
NECAP1-208ENST00000545807 CHIC1Q5VXU3 224 aa10.69□□□□□ -0.7
NECAP1-208ENST00000545807 MROH2BQ7Z745 1585 aa10.69□□□□□ -0.7
NECAP1-208ENST00000545807 PPARGC1BQ86YN6 1023 aaKnown RBP10.69□□□□□ -0.7
NECAP1-208ENST00000545807 FAM9AQ8IZU1 332 aaPredicted RBP10.64□□□□□ -0.71
NECAP1-208ENST00000545807 BICRAQ9NZM4 1560 aa10.62□□□□□ -0.71
NECAP1-208ENST00000545807 WIZO95785 1651 aa10.61□□□□□ -0.71
NECAP1-208ENST00000545807 SLC24A1O60721 1099 aa10.59□□□□□ -0.71
NECAP1-208ENST00000545807 EHMT2Q96KQ7 1210 aa10.59□□□□□ -0.71
NECAP1-208ENST00000545807 BAZ1AQ9NRL2 1556 aaPredicted RBP10.54□□□□□ -0.72
NECAP1-208ENST00000545807 TRIM41Q8WV44 630 aa10.5□□□□□ -0.73
NECAP1-208ENST00000545807 SMARCA4P51532 1647 aa10.5□□□□□ -0.73
NECAP1-208ENST00000545807 CENPBP07199 599 aaPredicted RBP10.47□□□□□ -0.73
NECAP1-208ENST00000545807 LOC105371045A0A1W2PR82 267 aa10.47□□□□□ -0.73
NECAP1-208ENST00000545807 ACIN1Q9UKV3 1341 aaKnown RBP10.43□□□□□ -0.74
NECAP1-208ENST00000545807 CCDC88BA6NC98 1476 aa10.39□□□□□ -0.75
NECAP1-208ENST00000545807 ATAD2BQ9ULI0 1458 aa10.37□□□□□ -0.75
NECAP1-208ENST00000545807 BAZ1BQ9UIG0 1483 aaKnown RBP10.36□□□□□ -0.75
NECAP1-208ENST00000545807 TOP2AP11388 1531 aaKnown RBP10.36□□□□□ -0.75
NECAP1-208ENST00000545807 PCGF6Q9BYE7 350 aa10.35□□□□□ -0.75
NECAP1-208ENST00000545807 EIF4G1Q04637 1599 aaKnown RBP10.33□□□□□ -0.76
NECAP1-208ENST00000545807 SMARCA2P51531 1590 aa10.31□□□□□ -0.76
NECAP1-208ENST00000545807 NEUROD1Q13562 356 aa10.3□□□□□ -0.76
NECAP1-208ENST00000545807 ABCC8Q09428 1581 aa10.3□□□□□ -0.76
NECAP1-208ENST00000545807 GTF3C3Q9Y5Q9 886 aa10.29□□□□□ -0.76
NECAP1-208ENST00000545807 ANP32EQ9BTT0 268 aa10.28□□□□□ -0.76
NECAP1-208ENST00000545807 DNAJC5BQ9UF47 199 aa10.27□□□□□ -0.76
NECAP1-208ENST00000545807 DAXXQ9UER7 740 aaPredicted RBP10.27□□□□□ -0.77
NECAP1-208ENST00000545807 ZEB1P37275 1124 aaPredicted RBP10.26□□□□□ -0.77
NECAP1-208ENST00000545807 CC2D2AQ9P2K1 1620 aa10.2□□□□□ -0.78
NECAP1-208ENST00000545807 PEG3Q9GZU2 1588 aa10.2□□□□□ -0.78
NECAP1-208ENST00000545807 NCAPD3P42695 1498 aa10.19□□□□□ -0.78
NECAP1-208ENST00000545807 RANGAP1P46060 587 aaPredicted RBP10.18□□□□□ -0.78
NECAP1-208ENST00000545807 SOGA1O94964 1423 aa10.14□□□□□ -0.79
NECAP1-208ENST00000545807 WRNQ14191 1432 aaPredicted RBP eCLIP10.14□□□□□ -0.79
NECAP1-208ENST00000545807 CSRNP3Q8WYN3 585 aa10.13□□□□□ -0.79
NECAP1-208ENST00000545807 UBTFP17480 764 aaKnown RBP10.12□□□□□ -0.79
NECAP1-208ENST00000545807 RUSC2Q8N2Y8 1516 aa10.12□□□□□ -0.79
NECAP1-208ENST00000545807 HMGXB3Q12766 1538 aa10.1□□□□□ -0.79
NECAP1-208ENST00000545807 EIF5BO60841 1220 aaKnown RBP10.08□□□□□ -0.8
NECAP1-208ENST00000545807 NESP48681 1621 aa10.07□□□□□ -0.8
NECAP1-208ENST00000545807 SYNJ1O43426 1573 aa10.05□□□□□ -0.8
NECAP1-208ENST00000545807 CADPSQ9ULU8 1353 aa10.04□□□□□ -0.8
NECAP1-208ENST00000545807 UBE2Q2Q8WVN8 375 aa10.04□□□□□ -0.8
NECAP1-208ENST00000545807 CFTRP13569 1480 aa10.01□□□□□ -0.81
NECAP1-208ENST00000545807 TRIM26Q12899 539 aaPredicted RBP9.96□□□□□ -0.82
NECAP1-208ENST00000545807 CUX1P39880 1505 aa9.95□□□□□ -0.82
NECAP1-208ENST00000545807 FANCD2Q9BXW9 1451 aa9.95□□□□□ -0.82
NECAP1-208ENST00000545807 ANO8Q9HCE9 1232 aaPredicted RBP9.94□□□□□ -0.82
NECAP1-208ENST00000545807 TOP2BQ02880 1626 aa9.9□□□□□ -0.82
NECAP1-208ENST00000545807 CUX2O14529 1486 aa9.89□□□□□ -0.83
NECAP1-208ENST00000545807 RAD54L2Q9Y4B4 1467 aa9.89□□□□□ -0.83
NECAP1-208ENST00000545807 FGD5Q6ZNL6 1462 aa9.88□□□□□ -0.83
NECAP1-208ENST00000545807 RAPGEF2Q9Y4G8 1499 aa9.88□□□□□ -0.83
NECAP1-208ENST00000545807 CEP162Q5TB80 1403 aa9.87□□□□□ -0.83
NECAP1-208ENST00000545807 TSHZ2Q9NRE2 1034 aa9.87□□□□□ -0.83
NECAP1-208ENST00000545807 EEA1Q15075 1411 aa9.86□□□□□ -0.83
NECAP1-208ENST00000545807 TDRD9Q8NDG6 1382 aaKnown RBP9.86□□□□□ -0.83
NECAP1-208ENST00000545807 CEP164Q9UPV0 1460 aa9.85□□□□□ -0.83
NECAP1-208ENST00000545807 P3H3Q8IVL6 736 aa9.85□□□□□ -0.83
NECAP1-208ENST00000545807 KIF27Q86VH2 1401 aa9.85□□□□□ -0.83
NECAP1-208ENST00000545807 GOLGA3Q08378 1498 aa9.85□□□□□ -0.83
NECAP1-208ENST00000545807 PDS5BQ9NTI5 1447 aa9.84□□□□□ -0.83
NECAP1-208ENST00000545807 TNIKQ9UKE5 1360 aa9.83□□□□□ -0.84
NECAP1-208ENST00000545807 PLEKHG5O94827 1062 aa9.83□□□□□ -0.84
NECAP1-208ENST00000545807 ATP1B4Q9UN42 357 aaPredicted RBP9.82□□□□□ -0.84
NECAP1-208ENST00000545807 BIVM-ERCC5R4GMW8 1640 aa9.82□□□□□ -0.84
NECAP1-208ENST00000545807 TOPBP1Q92547 1522 aa9.82□□□□□ -0.84
NECAP1-208ENST00000545807 SENP3Q9H4L4 574 aaPredicted RBP9.81□□□□□ -0.84
NECAP1-208ENST00000545807 CLSPNQ9HAW4 1339 aa9.81□□□□□ -0.84
NECAP1-208ENST00000545807 URB2Q14146 1524 aaKnown RBP9.81□□□□□ -0.84
NECAP1-208ENST00000545807 ERCC6Q03468 1493 aa9.8□□□□□ -0.84
NECAP1-208ENST00000545807 POLA1P09884 1462 aaPredicted RBP9.8□□□□□ -0.84
NECAP1-208ENST00000545807 IGF1RP08069 1367 aa9.79□□□□□ -0.84
NECAP1-208ENST00000545807 CLIP1P30622 1438 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms