RNA–Protein interactions for RNA: ENST00000438066.1

SPEN-202, Transcript of spen family transcriptional repressor, humanhuman

TSL 3

Gene SPEN, Length 1,733 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPEN-202ENST00000438066 CHIC1Q5VXU3 224 aa21.1■□□□□ 0.97
SPEN-202ENST00000438066 AEBP2Q6ZN18 517 aaPredicted RBP20.77■□□□□ 0.92
SPEN-202ENST00000438066 PHF23Q9BUL5 403 aaPredicted RBP18.71■□□□□ 0.59
SPEN-202ENST00000438066 PLPPR3Q6T4P5 718 aa17.54■□□□□ 0.4
SPEN-202ENST00000438066 SENP3Q9H4L4 574 aaPredicted RBP17.41■□□□□ 0.38
SPEN-202ENST00000438066 ADRA2BP18089 450 aa16.5■□□□□ 0.23
SPEN-202ENST00000438066 EHMT2Q96KQ7 1210 aa16.36■□□□□ 0.21
SPEN-202ENST00000438066 KCNA4P22459 653 aa16.32■□□□□ 0.2
SPEN-202ENST00000438066 PPP6R1Q9UPN7 881 aa16.25■□□□□ 0.19
SPEN-202ENST00000438066 FOXD1Q16676 465 aa16.11■□□□□ 0.17
SPEN-202ENST00000438066 CSRNP3Q8WYN3 585 aa15.68■□□□□ 0.1
SPEN-202ENST00000438066 SLC4A1APQ9BWU0 796 aaKnown RBP15.67■□□□□ 0.1
SPEN-202ENST00000438066 PPP4R3CPQ6ZMV5 832 aa15.6■□□□□ 0.09
SPEN-202ENST00000438066 PIAS4Q8N2W9 510 aaPredicted RBP15.43■□□□□ 0.06
SPEN-202ENST00000438066 NCBP3Q53F19 620 aaKnown RBP15.4■□□□□ 0.06
SPEN-202ENST00000438066 NPM3O75607 178 aaKnown RBP15.25■□□□□ 0.03
SPEN-202ENST00000438066 ZBTB22O15209 634 aa15.04■□□□□ -0
SPEN-202ENST00000438066 CNKSR2Q8WXI2 1034 aa14.92□□□□□ -0.02
SPEN-202ENST00000438066 SCAF1Q9H7N4 1312 aaKnown RBP14.79□□□□□ -0.04
SPEN-202ENST00000438066 FOXD4L1Q9NU39 408 aa14.69□□□□□ -0.06
SPEN-202ENST00000438066 SLC24A1O60721 1099 aa14.55□□□□□ -0.08
SPEN-202ENST00000438066 MAPK8IP2Q13387 824 aaPredicted RBP14.52□□□□□ -0.08
SPEN-202ENST00000438066 DNAJC5BQ9UF47 199 aa14.51□□□□□ -0.09
SPEN-202ENST00000438066 RTN4Q9NQC3 1192 aaKnown RBP14.5□□□□□ -0.09
SPEN-202ENST00000438066 MSH5O43196 834 aa14.42□□□□□ -0.1
SPEN-202ENST00000438066 AMER1Q5JTC6 1135 aaPredicted RBP14.41□□□□□ -0.1
SPEN-202ENST00000438066 RNF216Q9NWF9 866 aaPredicted RBP14.4□□□□□ -0.1
SPEN-202ENST00000438066 SLC4A2P04920 1241 aa14.18□□□□□ -0.14
SPEN-202ENST00000438066 FKBP8Q14318 412 aa14.14□□□□□ -0.15
SPEN-202ENST00000438066 HOXD11P31277 338 aaPredicted RBP14.1□□□□□ -0.15
SPEN-202ENST00000438066 DMRT2Q9Y5R5 561 aa14.04□□□□□ -0.16
SPEN-202ENST00000438066 ATXN8OSP0DMR3 200 aa14.04□□□□□ -0.16
SPEN-202ENST00000438066 MYCNP04198 464 aaPredicted RBP14.02□□□□□ -0.16
SPEN-202ENST00000438066 ATF5Q9Y2D1 282 aaPredicted RBP13.67□□□□□ -0.22
SPEN-202ENST00000438066 DCAF8L1A6NGE4 600 aa13.5□□□□□ -0.25
SPEN-202ENST00000438066 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.5□□□□□ -0.258e-7■■□□□ 11.6
SPEN-202ENST00000438066 SAMD1Q6SPF0 538 aaPredicted RBP13.45□□□□□ -0.26
SPEN-202ENST00000438066 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.44□□□□□ -0.26
SPEN-202ENST00000438066 HNRNPUL2Q1KMD3 747 aaKnown RBP13.44□□□□□ -0.26
SPEN-202ENST00000438066 NISCHQ9Y2I1 1504 aa13.39□□□□□ -0.27
SPEN-202ENST00000438066 U3KPZ7 1027 aaPredicted RBP13.38□□□□□ -0.27
SPEN-202ENST00000438066 PLCB2Q00722 1185 aa13.3□□□□□ -0.28
SPEN-202ENST00000438066 FBXO3Q9UK99 471 aa13.3□□□□□ -0.28
SPEN-202ENST00000438066 ZNF219Q9P2Y4 722 aaPredicted RBP13.28□□□□□ -0.28
SPEN-202ENST00000438066 SPDYE4A6NLX3 237 aa13.22□□□□□ -0.29
SPEN-202ENST00000438066 HAP1P54257 671 aaPredicted RBP13.16□□□□□ -0.3
SPEN-202ENST00000438066 DCAF8L2P0C7V8 631 aa13.15□□□□□ -0.3
SPEN-202ENST00000438066 VASPP50552 380 aaPredicted RBP13.14□□□□□ -0.31
SPEN-202ENST00000438066 MKRN4PQ13434 485 aaPredicted RBP13.09□□□□□ -0.31
SPEN-202ENST00000438066 PROM2Q8N271 834 aa13.07□□□□□ -0.32
SPEN-202ENST00000438066 IFNLR1Q8IU57 520 aaPredicted RBP13.06□□□□□ -0.32
SPEN-202ENST00000438066 APLP2Q06481 763 aa13.05□□□□□ -0.32
SPEN-202ENST00000438066 BCANQ96GW7 911 aa12.99□□□□□ -0.33
SPEN-202ENST00000438066 PRKCSHP14314 528 aaPredicted RBP12.96□□□□□ -0.33
SPEN-202ENST00000438066 PKD2Q13563 968 aa12.96□□□□□ -0.33
SPEN-202ENST00000438066 FBLN2P98095 1184 aa12.95□□□□□ -0.34
SPEN-202ENST00000438066 VSIG10Q8N0Z9 540 aa12.9□□□□□ -0.34
SPEN-202ENST00000438066 TAOK2Q9UL54 1235 aa12.87□□□□□ -0.35
SPEN-202ENST00000438066 TRHP20396 242 aaPredicted RBP12.85□□□□□ -0.35
SPEN-202ENST00000438066 POLA2Q14181 598 aa12.82□□□□□ -0.36
SPEN-202ENST00000438066 POTEDQ86YR6 584 aa12.82□□□□□ -0.36
SPEN-202ENST00000438066 SPINK5Q9NQ38 1064 aaPredicted RBP12.78□□□□□ -0.36
SPEN-202ENST00000438066 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.77□□□□□ -0.36
SPEN-202ENST00000438066 KDM2AQ9Y2K7 1162 aa12.75□□□□□ -0.37
SPEN-202ENST00000438066 KLHL34Q8N239 644 aa12.74□□□□□ -0.37
SPEN-202ENST00000438066 BBXQ8WY36 941 aaPredicted RBP12.74□□□□□ -0.37
SPEN-202ENST00000438066 ECM2O94769 699 aaPredicted RBP12.72□□□□□ -0.37
SPEN-202ENST00000438066 PAXIP1Q6ZW49 1069 aaPredicted RBP12.72□□□□□ -0.37
SPEN-202ENST00000438066 NPM1P06748 294 aaKnown RBP eCLIP12.71□□□□□ -0.38
SPEN-202ENST00000438066 SPOCK2Q92563 424 aa12.71□□□□□ -0.38
SPEN-202ENST00000438066 CFAP44Q96MT7 982 aa12.71□□□□□ -0.38
SPEN-202ENST00000438066 TPRNQ4KMQ1 711 aa12.7□□□□□ -0.38
SPEN-202ENST00000438066 CAPN15O75808 1086 aa12.67□□□□□ -0.38
SPEN-202ENST00000438066 RGL2O15211 777 aa12.59□□□□□ -0.39
SPEN-202ENST00000438066 ZBTB12Q9Y330 459 aaPredicted RBP12.57□□□□□ -0.4
SPEN-202ENST00000438066 SPRYD3Q8NCJ5 442 aa12.55□□□□□ -0.4
SPEN-202ENST00000438066 ABCB7O75027 752 aa12.54□□□□□ -0.4
SPEN-202ENST00000438066 PLCD3Q8N3E9 789 aa12.54□□□□□ -0.4
SPEN-202ENST00000438066 TSHZ2Q9NRE2 1034 aa12.54□□□□□ -0.4
SPEN-202ENST00000438066 STAG3Q9UJ98 1225 aa12.51□□□□□ -0.41
SPEN-202ENST00000438066 ZNF692Q9BU19 519 aaPredicted RBP12.49□□□□□ -0.41
SPEN-202ENST00000438066 RNF39Q9H2S5 420 aa12.48□□□□□ -0.41
SPEN-202ENST00000438066 MIER1Q8N108 512 aa12.46□□□□□ -0.41
SPEN-202ENST00000438066 CHGAP10645 457 aaKnown RBP12.45□□□□□ -0.42
SPEN-202ENST00000438066 CIZ1Q9ULV3 898 aaPredicted RBP12.42□□□□□ -0.42
SPEN-202ENST00000438066 PABPN1Q86U42 306 aaKnown RBP eCLIP12.37□□□□□ -0.43
SPEN-202ENST00000438066 OSCARQ8IYS5 282 aa12.36□□□□□ -0.43
SPEN-202ENST00000438066 C1QBPQ07021 282 aaKnown RBP12.35□□□□□ -0.43
SPEN-202ENST00000438066 SSUH2Q9Y2M2 353 aa12.35□□□□□ -0.43
SPEN-202ENST00000438066 SPDYE2BA6NHP3 402 aa12.34□□□□□ -0.43
SPEN-202ENST00000438066 SPDYE6P0CI01 402 aa12.34□□□□□ -0.43
SPEN-202ENST00000438066 NBR1Q14596 966 aa12.34□□□□□ -0.43
SPEN-202ENST00000438066 SPDYE2Q495Y8 402 aa12.34□□□□□ -0.43
SPEN-202ENST00000438066 PLEKHG5O94827 1062 aa12.27□□□□□ -0.45
SPEN-202ENST00000438066 DNAJC5Q9H3Z4 198 aa12.27□□□□□ -0.45
SPEN-202ENST00000438066 ZBTB47Q9UFB7 747 aaPredicted RBP12.26□□□□□ -0.45
SPEN-202ENST00000438066 HS6ST3Q8IZP7 471 aa12.24□□□□□ -0.45
SPEN-202ENST00000438066 DSG3P32926 999 aa12.21□□□□□ -0.45
SPEN-202ENST00000438066 TRIM41Q8WV44 630 aa12.2□□□□□ -0.46
SPEN-202ENST00000438066 RNF25Q96BH1 459 aaPredicted RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms