Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 KRT16P1-201ENST00000399124 1418 ntBASIC14.09□□□□□ -0.15
HIST1H1AQ02539 KRT8P11-201ENST00000409686 1436 ntBASIC14.09□□□□□ -0.15
HIST1H1AQ02539 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 MADD-208ENST00000405573 1823 ntTSL 5 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 AC073592.3-201ENST00000625118 1834 ntBASIC14.09□□□□□ -0.15
HIST1H1AQ02539 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 RPS2P4-201ENST00000476944 856 ntBASIC14.09□□□□□ -0.15
HIST1H1AQ02539 GLRB-205ENST00000512619 728 ntTSL 3 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 PRSS44-201ENST00000515154 1146 ntBASIC14.09□□□□□ -0.15
HIST1H1AQ02539 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 CR392000.1-201ENST00000624770 1228 ntBASIC14.09□□□□□ -0.15
HIST1H1AQ02539 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 AL162741.1-201ENST00000565563 1558 ntBASIC14.09□□□□□ -0.15
HIST1H1AQ02539 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIST1H1AQ02539 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
HIST1H1AQ02539 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.15
HIST1H1AQ02539 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
HIST1H1AQ02539 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC14.08□□□□□ -0.15
HIST1H1AQ02539 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC14.08□□□□□ -0.15
HIST1H1AQ02539 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 AC004951.3-201ENST00000418645 1148 ntBASIC14.08□□□□□ -0.16
HIST1H1AQ02539 RPPH1-201ENST00000516869 333 ntBASIC14.08□□□□□ -0.16
HIST1H1AQ02539 TK2-204ENST00000525974 1178 ntTSL 2 BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 AL353708.3-201ENST00000610272 989 ntBASIC14.08□□□□□ -0.16
HIST1H1AQ02539 MMD2-204ENST00000612910 778 ntTSL 5 BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HIST1H1AQ02539 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HIST1H1AQ02539 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC14.07□□□□□ -0.16
HIST1H1AQ02539 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC14.07□□□□□ -0.16
HIST1H1AQ02539 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIST1H1AQ02539 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC14.07□□□□□ -0.16
HIST1H1AQ02539 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HIST1H1AQ02539 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
HIST1H1AQ02539 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC14.07□□□□□ -0.16
HIST1H1AQ02539 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HIST1H1AQ02539 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
HIST1H1AQ02539 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HIST1H1AQ02539 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC14.07□□□□□ -0.16
HIST1H1AQ02539 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms