Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 BID-204ENST00000399767 2129 ntTSL 2 BASIC23.11■■□□□ 1.29
COL5A3P25940 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC23.11■■□□□ 1.29
COL5A3P25940 RNF151-202ENST00000569210 853 ntTSL 2 BASIC23.11■■□□□ 1.29
COL5A3P25940 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC23.11■■□□□ 1.29
COL5A3P25940 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC23.11■■□□□ 1.29
COL5A3P25940 CAND2-206ENST00000626378 333 ntTSL 5 BASIC23.11■■□□□ 1.29
COL5A3P25940 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL5A3P25940 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC23.1■■□□□ 1.29
COL5A3P25940 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
COL5A3P25940 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC23.1■■□□□ 1.29
COL5A3P25940 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL5A3P25940 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL5A3P25940 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL5A3P25940 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL5A3P25940 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC23.1■■□□□ 1.29
COL5A3P25940 AP002414.3-201ENST00000589352 1468 ntBASIC23.1■■□□□ 1.29
COL5A3P25940 AC099343.3-201ENST00000605834 2503 ntBASIC23.1■■□□□ 1.29
COL5A3P25940 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL5A3P25940 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
COL5A3P25940 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
COL5A3P25940 LINC01126-201ENST00000623515 1646 ntBASIC23.1■■□□□ 1.29
COL5A3P25940 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL5A3P25940 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL5A3P25940 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC23.1■■□□□ 1.29
COL5A3P25940 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC23.1■■□□□ 1.29
COL5A3P25940 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL5A3P25940 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
COL5A3P25940 AL691403.2-201ENST00000618460 490 ntBASIC23.1■■□□□ 1.29
COL5A3P25940 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
COL5A3P25940 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
COL5A3P25940 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
COL5A3P25940 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC23.09■■□□□ 1.29
COL5A3P25940 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC23.09■■□□□ 1.29
COL5A3P25940 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC23.09■■□□□ 1.29
COL5A3P25940 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC23.09■■□□□ 1.29
COL5A3P25940 HLA-J-201ENST00000462773 1622 ntBASIC23.09■■□□□ 1.29
COL5A3P25940 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC23.09■■□□□ 1.29
COL5A3P25940 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
COL5A3P25940 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
COL5A3P25940 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
COL5A3P25940 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
COL5A3P25940 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
COL5A3P25940 MIR940-201ENST00000401276 94 ntBASIC23.09■■□□□ 1.29
COL5A3P25940 AC004832.2-201ENST00000426397 482 ntBASIC23.09■■□□□ 1.29
COL5A3P25940 KRT18P65-201ENST00000439811 1286 ntBASIC23.09■■□□□ 1.29
COL5A3P25940 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC23.09■■□□□ 1.29
COL5A3P25940 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC23.09■■□□□ 1.29
COL5A3P25940 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
COL5A3P25940 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
COL5A3P25940 AC107918.4-202ENST00000641623 219 ntBASIC23.09■■□□□ 1.29
COL5A3P25940 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
COL5A3P25940 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
COL5A3P25940 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
COL5A3P25940 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
COL5A3P25940 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC23.09■■□□□ 1.29
COL5A3P25940 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL5A3P25940 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
COL5A3P25940 MYLKP1-201ENST00000509077 1580 ntBASIC23.08■■□□□ 1.29
COL5A3P25940 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL5A3P25940 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
COL5A3P25940 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC23.08■■□□□ 1.29
COL5A3P25940 URGCP-206ENST00000446958 365 ntTSL 2 BASIC23.08■■□□□ 1.29
COL5A3P25940 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC23.08■■□□□ 1.29
COL5A3P25940 AC040169.1-201ENST00000565382 521 ntBASIC23.08■■□□□ 1.29
COL5A3P25940 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL5A3P25940 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC23.08■■□□□ 1.29
COL5A3P25940 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC23.08■■□□□ 1.29
COL5A3P25940 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC23.08■■□□□ 1.29
COL5A3P25940 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
COL5A3P25940 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC23.08■■□□□ 1.28
COL5A3P25940 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC23.08■■□□□ 1.28
COL5A3P25940 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.28
COL5A3P25940 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
COL5A3P25940 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC23.08■■□□□ 1.28
COL5A3P25940 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC23.08■■□□□ 1.28
COL5A3P25940 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
COL5A3P25940 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
COL5A3P25940 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC23.07■■□□□ 1.28
COL5A3P25940 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC23.07■■□□□ 1.28
COL5A3P25940 KRT18P27-201ENST00000427733 1299 ntBASIC23.07■■□□□ 1.28
COL5A3P25940 AC112698.1-201ENST00000510299 916 ntBASIC23.07■■□□□ 1.28
COL5A3P25940 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
COL5A3P25940 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC23.07■■□□□ 1.28
COL5A3P25940 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC23.07■■□□□ 1.28
COL5A3P25940 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC23.07■■□□□ 1.28
COL5A3P25940 AC079776.2-201ENST00000641154 1609 ntBASIC23.06■■□□□ 1.28
COL5A3P25940 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC23.06■■□□□ 1.28
COL5A3P25940 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC23.06■■□□□ 1.28
COL5A3P25940 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL5A3P25940 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC23.06■■□□□ 1.28
COL5A3P25940 AP001160.2-201ENST00000596071 487 ntBASIC23.06■■□□□ 1.28
COL5A3P25940 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL5A3P25940 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL5A3P25940 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
COL5A3P25940 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
COL5A3P25940 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
COL5A3P25940 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
COL5A3P25940 AL499627.1-201ENST00000569373 2188 ntBASIC23.06■■□□□ 1.28
COL5A3P25940 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
COL5A3P25940 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms